Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq246 493 2e-137 seq520 188 1e-45 >seq246 Length=697 Score = 493 bits (546), Expect = 2e-137 Identities = 287/295 (97%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 570 TACTAAGCTCAATTACCATTGCGACGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 512 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 452 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 451 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 392 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 332 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 277 >seq520 Length=96894 Score = 188 bits (208), Expect = 1e-45 Identities = 200/264 (76%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||| || | || ||||||||||||| | | || ||||| |||||| |||| |||||||| Sbjct 95726 GGTTATTAATAAAGTAAAACTAACCTATTTTATAACGGTTTAAACCTAGCTTACGTTCCC 95667 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||| | ||| || ||| || ||||| |||||| ||| |||| ||| |||||| Sbjct 95666 TATTAATAGGTAAATAATTTAATACTTACTAAATTCTACTTTAGTATAATAAAAAGAGCT 95607 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 | || |||||| |||||| ||||| |||| ||||||| || | | |||| |||||| Sbjct 95606 AATATTAAAGGATTAAAAAGTAACGTTACTATAAACGCTTAGCCGTTATAAGCTAGTTAT 95547 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 | | | ||||||||| | | ||||||||| | |||||| | |||||||||||| ||| Sbjct 95546 CTTTATAGTAACTTTTTTAGTACCTCTAGCTTTAAATTTTAAAGGACTAAAGGATTAATA 95487 Query 269 GGCCACACTTTCATGGTTTGTATT 292 || | ||||| || |||| |||| Sbjct 95486 AGCTATACTTTTATAGTTTATATT 95463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395232448