Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq52 266 3e-69
seq520 127 2e-27
seq542 78.8 1e-12
>seq52
Length=224
Score = 266 bits (294), Expect = 3e-69
Identities = 173/189 (92%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62
|| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||||
Sbjct 224 AAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 165
Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122
||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 164 TTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CC 106
Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182
|||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 105 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 46
Query 183 GGATTTATT 191
|||||||||
Sbjct 45 GGATTTATT 37
>seq520
Length=96894
Score = 127 bits (140), Expect = 2e-27
Identities = 140/185 (76%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66
|||||||||||||| ||||||||| || | ||| |||||| | || |||| ||||
Sbjct 91213 AGGACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAGGCCTATACTTAAATATATTAG 91272
Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126
|| |||||||| |||| |||| |||||||||| | |||| || || | | |||
Sbjct 91273 TATAGAATAATAAAATAAAACGTATAGTTCTATTTTATTAGTTTTTAAGA-CTACTATAA 91331
Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
| || |||| ||||||| ||||| | |||||| |||| | | |||| |||||||| |||
Sbjct 91332 TAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 91391
Query 187 TTATT 191
|||||
Sbjct 91392 TTATT 91396
>seq542
Length=508980
Score = 78.8 bits (86), Expect = 1e-12
Identities = 68/83 (82%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 106 GGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTG 165
|||| |||||||| | |||||||| |||| || ||| ||| | ||||||||||| |
Sbjct 466611 GGTTCCTAGGACCATC-GTAATGATTAATAGGGGCAGTTGGGTGCACCAGTATTCAATCG 466553
Query 166 TCAAAGGTGAAATTCTTGGATTT 188
||| |||||||||||||||||||
Sbjct 466552 TCAGAGGTGAAATTCTTGGATTT 466530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511997232320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |