Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq52 266 3e-69 seq520 127 2e-27 seq542 78.8 1e-12 >seq52 Length=224 Score = 266 bits (294), Expect = 3e-69 Identities = 173/189 (92%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62 || |||||||||||||||||||||||||||| | || | |||||||| |||||||||||| Sbjct 224 AAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 165 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 164 TTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CC 106 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 105 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 46 Query 183 GGATTTATT 191 ||||||||| Sbjct 45 GGATTTATT 37 >seq520 Length=96894 Score = 127 bits (140), Expect = 2e-27 Identities = 140/185 (76%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||||||||||||| ||||||||| || | ||| |||||| | || |||| |||| Sbjct 91213 AGGACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAGGCCTATACTTAAATATATTAG 91272 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 || |||||||| |||| |||| |||||||||| | |||| || || | | ||| Sbjct 91273 TATAGAATAATAAAATAAAACGTATAGTTCTATTTTATTAGTTTTTAAGA-CTACTATAA 91331 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || |||| ||||||| ||||| | |||||| |||| | | |||| |||||||| ||| Sbjct 91332 TAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 91391 Query 187 TTATT 191 ||||| Sbjct 91392 TTATT 91396 >seq542 Length=508980 Score = 78.8 bits (86), Expect = 1e-12 Identities = 68/83 (82%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 106 GGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTG 165 |||| |||||||| | |||||||| |||| || ||| ||| | ||||||||||| | Sbjct 466611 GGTTCCTAGGACCATC-GTAATGATTAATAGGGGCAGTTGGGTGCACCAGTATTCAATCG 466553 Query 166 TCAAAGGTGAAATTCTTGGATTT 188 ||| ||||||||||||||||||| Sbjct 466552 TCAGAGGTGAAATTCTTGGATTT 466530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511997232320