Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq235 230 4e-58 seq520 114 2e-23 >seq235 Length=547 Score = 230 bits (254), Expect = 4e-58 Identities = 142/152 (93%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 152 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 93 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 33 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||||||||||| ||||||||| Sbjct 32 GATGTTCTGGGCCGCACGCGCGTTACACTGAC 1 >seq520 Length=96894 Score = 114 bits (126), Expect = 2e-23 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||||| ||| |||| || ||||||| ||| ||||| |||| | | Sbjct 91849 GCTTCTTAGAGGGACTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTTTATA 91908 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || || |||||| |||| || | | || ||| | ||||| || ||| | | Sbjct 91909 ATACCTTTAGATATTCTAAGCTATATATATGTTATACTAATAGAGCTAATAAGTACTT-- 91966 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | || || |||| || |||||||| ||||||||| | | || |||||||||||| Sbjct 91967 CTTTAGCTAAAAGGCCTAAGTAATCTTATTAAACTCTATTATACTAAGGATAGAGCATTA 92026 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||||||| ||||| || |||||| ||||||| Sbjct 92027 TAATTATTACTCTTTAATAAGGAATCTTTAGTAAG 92061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194714624