Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq400 387 4e-105 seq246 325 1e-86 seq158 295 2e-77 seq520 223 1e-55 >seq400 Length=1139448 Score = 387 bits (428), Expect = 4e-105 Identities = 287/334 (86%), Gaps = 15/334 (4%) Strand=Plus/Minus Query 210 AGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTC 269 || ||| ||||| ||||| || |||||||| |||||||||||||| ||| |||| Sbjct 633035 AGCGGTGCTTCACCGGCGCCAAA---GCTCCCACCTATTCTACACCTCT---GTCTTTTC 632982 Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||| ||| |||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 632981 ACAATCTCGAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTCTGTAAAGC 632922 Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 |||||||||| |||| ||||| |||| ||| |||||||| |||||||||||||| || Sbjct 632921 ACGTTCCCTTGACTGTAGTTTCCCTAGGTAGCAGATAGGGTN-GTGGGAATCTCGTTGAT 632863 Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632862 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG-------- 632811 Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 632810 TTACTCCCGCTGTTTACCCGTGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTG 632751 Query 510 GGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 || ||||||||||||||||| | | |||| |||| Sbjct 632750 GGTAGAAATCACATTGCGTCCATACCACTCTCTG 632717 >seq246 Length=697 Score = 325 bits (360), Expect = 1e-86 Identities = 223/250 (89%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 245 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 186 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 185 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 126 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 125 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACG--TAAATCCAGCCCCGCTTCATTGA 68 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 67 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 11 Query 247 TTCTACACCT 256 |||||||||| Sbjct 10 TTCTACACCT 1 >seq158 Length=310 Score = 295 bits (326), Expect = 2e-77 Identities = 168/171 (98%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 60 Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTT 120 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 171 >seq520 Length=96894 Score = 223 bits (246), Expect = 1e-55 Identities = 363/520 (70%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||||| | ||| |||||||| || || || || |||| ||| | |||| |||||| Sbjct 95429 TCTTTTATTTTACTAAAGATTTCTATTTTCTATAAGCCCCCTTTAAAATACCTACGTTAT 95370 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 |||||| | || | |||| ||| |||||||| || | | ||| || | |||| | Sbjct 95369 AGTTTAATAAATATACCGCTTTAGCTAAACTCCCTACTTAATAATATCTTTAACCTAAGT 95310 Query 126 CGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATT 184 || ||||||||||| | | || | | | | | | | || | ||| ||| Sbjct 95309 TAGCTTATAAAGGACCTTAAAACTAAAA---GTTAGATATAAATCTAGCCCTACTTTATT 95253 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 | |||||||||||| ||| | ||||| |||||| | | | | || ||||| || Sbjct 95252 AAATAAGTAAAAAAATAATAGGAGTAGTAGTATTTTATTAGTACTAAA---GCTCCTACC 95196 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||| | || ||| | || | |||| ||| ||||| || | ||||| Sbjct 95195 TATTCTACACCTCTTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTCT 95136 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||| | || |||| | |||| ||||||| ||| | |||| ||| |||||||| Sbjct 95135 TCTTTCTCTACTAATTCTACTAAGCTTATTCCCTTAGCTATAGTTTTACTAAATAGTAGA 95076 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 || ||| ||| ||||||| |||||| ||| || | | |||||||| || | ||| | Sbjct 95075 TAAGGATAGTAGGAATCTTATTAATCTATTTATATACATTACTAATTAAATAATAAGGTA 95016 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||| |||||||||||||||| |||||||||| |||||| ||| ||| |||| Sbjct 95015 TTTAGCTACCTTAAGAGAGTTATAGTTACTCTTATTATTTACCTATACTTAGTTAAATTA 94956 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 ||| ||||| | ||| |||| ||| |||||| | ||| Sbjct 94955 CTTTACTTTAATATTTAGAGTACTAAATAGAAATTATATT 94916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635190875584