Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq400 387 4e-105
seq246 325 1e-86
seq158 295 2e-77
seq520 223 1e-55
>seq400
Length=1139448
Score = 387 bits (428), Expect = 4e-105
Identities = 287/334 (86%), Gaps = 15/334 (4%)
Strand=Plus/Minus
Query 210 AGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTC 269
|| ||| ||||| ||||| || |||||||| |||||||||||||| ||| ||||
Sbjct 633035 AGCGGTGCTTCACCGGCGCCAAA---GCTCCCACCTATTCTACACCTCT---GTCTTTTC 632982
Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
|||| ||| |||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 632981 ACAATCTCGAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTCTGTAAAGC 632922
Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389
|||||||||| |||| ||||| |||| ||| |||||||| |||||||||||||| ||
Sbjct 632921 ACGTTCCCTTGACTGTAGTTTCCCTAGGTAGCAGATAGGGTN-GTGGGAATCTCGTTGAT 632863
Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632862 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG-------- 632811
Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 632810 TTACTCCCGCTGTTTACCCGTGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTG 632751
Query 510 GGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|| ||||||||||||||||| | | |||| ||||
Sbjct 632750 GGTAGAAATCACATTGCGTCCATACCACTCTCTG 632717
>seq246
Length=697
Score = 325 bits (360), Expect = 1e-86
Identities = 223/250 (89%), Gaps = 5/250 (2%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 245 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 186
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 185 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 126
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 125 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACG--TAAATCCAGCCCCGCTTCATTGA 68
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 67 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 11
Query 247 TTCTACACCT 256
||||||||||
Sbjct 10 TTCTACACCT 1
>seq158
Length=310
Score = 295 bits (326), Expect = 2e-77
Identities = 168/171 (98%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 60
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTT 120
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 171
>seq520
Length=96894
Score = 223 bits (246), Expect = 1e-55
Identities = 363/520 (70%), Gaps = 7/520 (1%)
Strand=Plus/Minus
Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
|||||| | ||| |||||||| || || || || |||| ||| | |||| ||||||
Sbjct 95429 TCTTTTATTTTACTAAAGATTTCTATTTTCTATAAGCCCCCTTTAAAATACCTACGTTAT 95370
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125
|||||| | || | |||| ||| |||||||| || | | ||| || | |||| |
Sbjct 95369 AGTTTAATAAATATACCGCTTTAGCTAAACTCCCTACTTAATAATATCTTTAACCTAAGT 95310
Query 126 CGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATT 184
|| ||||||||||| | | || | | | | | | | || | ||| |||
Sbjct 95309 TAGCTTATAAAGGACCTTAAAACTAAAA---GTTAGATATAAATCTAGCCCTACTTTATT 95253
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244
| |||||||||||| ||| | ||||| |||||| | | | | || ||||| ||
Sbjct 95252 AAATAAGTAAAAAAATAATAGGAGTAGTAGTATTTTATTAGTACTAAA---GCTCCTACC 95196
Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304
|||||||||||||| | || ||| | || | |||| ||| ||||| || | |||||
Sbjct 95195 TATTCTACACCTCTTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTCT 95136
Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364
|||||| | || |||| | |||| ||||||| ||| | |||| ||| ||||||||
Sbjct 95135 TCTTTCTCTACTAATTCTACTAAGCTTATTCCCTTAGCTATAGTTTTACTAAATAGTAGA 95076
Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424
|| ||| ||| ||||||| |||||| ||| || | | |||||||| || | ||| |
Sbjct 95075 TAAGGATAGTAGGAATCTTATTAATCTATTTATATACATTACTAATTAAATAATAAGGTA 95016
Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484
||| |||||||||||||||| |||||||||| |||||| ||| ||| ||||
Sbjct 95015 TTTAGCTACCTTAAGAGAGTTATAGTTACTCTTATTATTTACCTATACTTAGTTAAATTA 94956
Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524
||| ||||| | ||| |||| ||| |||||| | |||
Sbjct 94955 CTTTACTTTAATATTTAGAGTACTAAATAGAAATTATATT 94916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635190875584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |