Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq516 372 2e-98 seq449 136 3e-27 >seq516 Length=1641395 Score = 372 bits (412), Expect = 2e-98 Identities = 1156/1761 (66%), Gaps = 56/1761 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | ||||||||||| || | || ||||||||||| ||| Sbjct 1415268 TCGACAGTGAACTGGATAGGGGCAGCAGCCGCCTGAGTTCGCAGGTAGTACATGCCTGTC 1415327 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 || ||||| ||| |||| | ||| ||||| | || | || |||| | |||| | Sbjct 1415328 TTCAGGCCGAGCTT-CCAACCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATGGTCGGGT 1415385 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | ||||| ||| |||||| | |||||| ||||| |||| Sbjct 1415386 CCTTCATGTGAATGTTGAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCTGCGGCCA 1415445 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | ||| | | || | || || |||||||||||||||||||| | | | ||| Sbjct 1415446 TCTGAACAACGGTCCGCTGA---GAGATTTCCCAGACGGTCTTGTACAGA-GCCTTCACC 1415501 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || || || | | |||| ||| || ||||| || || || || || | Sbjct 1415502 TCGGCCGGGATGTTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATACGGTTCTTC 1415561 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429 || | || ||||||| |||| |||| |||| |||| ||| | | |||| || Sbjct 1415562 ATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAG--AAGCCAGGGGTTGACGA 1415619 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | ||||||||||||| ||||||||| || ||||||||||| ||| ||||| ||| Sbjct 1415620 CCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGC 1415679 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | ||| ||| ||| || || || | || ||||| |||||||| || || | || Sbjct 1415680 ACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGAC 1415739 Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGG 65607 ||| || | |||| | || | | || |||||||| ||| | |||| Sbjct 1415740 TGTTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGG 1415799 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 || | || || |||||| || | || || || | | || || Sbjct 1415800 A-------CGGCTTC-ACTCCCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCGA 1415851 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724 ||| | || ||||| |||||||||||||| || || || | ||||| || Sbjct 1415852 ACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGGTC---AG 1415908 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 || || || ||||||||||| || | |||||| || || |||||| | ||| Sbjct 1415909 AGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGACTC 1415968 Query 65785 GTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGG 65844 | | |||| || || | |||| || || |||||||| || |||| ||||| || Sbjct 1415969 GAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGACCTTGGACACCAAGGCCGATAGG 1416028 Query 65845 ACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAAT 65904 || ||||||| ||| | ||||| || |||||||||| |||| ||| || || Sbjct 1416029 GCGGTGACGCATGTTGCTGTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAATGAT 1416088 Query 65905 GCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATG 65964 | |||| |||||| || || || | | | | | | ||| || | Sbjct 1416089 CCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTC-----G 1416143 Query 65965 TTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 | | | || ||| | ||| | ||||| || ||||| || || || | | Sbjct 1416144 TAT-GCACTCTCGTTGTAGT--------CGACAAATGCAGGCAGGGCGAGCGAGGCCAAG 1416194 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||| ||||| | ||||||||| ||| ||||| | || || ||||||||||| Sbjct 1416195 TTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCACAGATTGGAA 1416254 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATCCTTGTACAT 66141 ||| ||||| || | |||| || || |||||||| ||| | || |||||| || | Sbjct 1416255 TTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTG-ATCCTTATAAAG 1416313 Query 66142 CATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGC 66201 |||| |||| | || ||||| || | ||| | ||||| | ||| || | || Sbjct 1416314 CATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTGAGC 1416373 Query 66202 CTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGG 66260 ||| | || | | | ||||| || | ||| ||||| | || || | | || || Sbjct 1416374 CTTTAGGGT-CTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACT 1416432 Query 66261 ATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 ||| || | |||| || | || |||| || |||||||| |||| ||| || | Sbjct 1416433 CTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACTCGC 1416492 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 ||| || ||| || | ||| || ||||| || ||||||||||| ||||||||||| Sbjct 1416493 CATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGC 1416552 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || |||||| ||||||| || ||||| | || | |||||| || | |||| Sbjct 1416553 GGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGG 1416612 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 | ||||| || || || ||||||||||| | ||| || ||| |||||| ||||||| Sbjct 1416613 CGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGA 1416672 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 ||||||||||| |||||||| || || | ||| || | || ||||| || |||||| Sbjct 1416673 CGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCAT 1416732 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||||||| ||||| || || || || || ||| || |||| ||||| || | Sbjct 1416733 TGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGC 1416792 Query 66621 CGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGA 66678 | ||| |||| ||||| ||||| || | | |||| | | ||||| || ||||| Sbjct 1416793 CAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTC--GTAGATGCCTTCGATGGA 1416850 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| ||| | ||| |||| ||| ||||| | | ||| || |||| Sbjct 1416851 GTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTT 1416910 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 ||| || ||||| | ||||| || || | | || ||||| | ||||| |||||||| Sbjct 1416911 GAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGTCTCGAT 1416970 Query 66799 GACAGCATCAATGTTTTCGCC 66819 ||| |||| ||| || || Sbjct 1416971 GACGCGCTCAACGTTGTCCCC 1416991 >seq449 Length=641369 Score = 136 bits (150), Expect = 3e-27 Identities = 211/297 (71%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||| || Sbjct 272717 ATCTGGCAAATGTACAAGAAGGCTGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 272658 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | | | | || | ||| || | ||||| Sbjct 272657 TCCAAGGACCTCCACGACTGGAACAACAAGATCAATGAT-GATGAGAAATACTTCATCTC 272599 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| |||||||| ||||| || ||||| ||||| | | || || Sbjct 272598 TCACATTCTTGCCTTCTTCGCCGCTTCCGACGGCATTGTCAACGAGAACCTTGTCGAGCG 272539 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | | || |||| ||||| | ||||| ||||| ||||||||||||||||| | Sbjct 272538 CTTCAGTGGAG-AGGTCCAAGTTCCAGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGA 272480 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| ||||||| |||| ||| | | || ||||| || ||||||| ||||| Sbjct 272479 TGGAGAACATCCACTCTGAGACCTACTCTCTCCTTATCGACACCTACATCAAGGAGC 272423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565296289120