Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq545 102 3e-16 >seq545 Length=1333520 Score = 102 bits (112), Expect = 3e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 21708 GGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAG 21767 ||||| ||||||| || | || || ||||||||||| ||||| | || |||||| Sbjct 813029 GGGGTGAAGATGCGCTCGACGACCAGCTGGGCGATGCGGTCGCCCTCGGAAATCTCAAAG 812970 Query 21768 TCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACG 21827 ||| ||| |||||||| ||||||| ||| ||| | ||| | || ||||| | Sbjct 812969 TCCGTGTCGGAGTGGTTAAAGAGCAGGACCTTGACGTGGCCGCGGTAGTCTGCGTCGATG 812910 Query 21828 ACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGG 21887 || ||||||||| ||||| |||||| || || || ||||||||||||| |||| Sbjct 812909 ACGCCGGCGCCGGTGTCGATGAAGTTCTTGGCCGCGAGGCCGGATCTGGGAGCGATGCGG 812850 Query 21888 CCGT 21891 |||| Sbjct 812849 CCGT 812846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084723931891284