Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2847 172 3e-41 seq151 95.1 7e-18 seq1538 80.6 1e-13 >seq2847 Length=8172 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 5269 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 5327 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5328 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 5384 >seq151 Length=7550 Score = 95.1 bits (104), Expect = 7e-18 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||| |||||||||||||||| | | |||||||| ||||||||| ||||||||| Sbjct 2280 ACTTTAATTTCTCGTAAGGTGCTAAACAAGTCAAAAA-ATAACATCGTTTAATCCCTAGT 2222 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 |||||||||| ||||||||||| || |||||| || |||| Sbjct 2221 TAGCATAGTTTATAGTTAAGACTACAACAGTATCTAATTATCTT 2178 >seq1538 Length=17301 Score = 80.6 bits (88), Expect = 1e-13 Identities = 81/104 (78%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 |||||||||||| ||||||||| | ||| |||| ||||||| | ||||||||| Sbjct 15005 ACTTTGATTTCTTGTAAGGTGCTAAATAAGTTAAAAA-ATAACATTATCTAATCCCTAGT 15063 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 | |||||||| ||||||||||| ||||||||| || |||| Sbjct 15064 TAGTATAGTTTATAGTTAAGACTACAACGGTATCTAATTATCTT 15107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278388625620