Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2847 477 2e-132 seq151 329 6e-88 seq1538 297 3e-78 >seq2847 Length=8172 Score = 477 bits (528), Expect = 2e-132 Identities = 295/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 5698 TGGTCCGGCCGGGCCTTTCCCTCTGCGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 5639 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 5638 AGCAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 5579 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 5578 TAGCATGGAATAATAGAATAGGACGCGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 5519 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5518 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 5459 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 5458 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 5400 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 5399 ACGAAAGTTAGGGG 5386 >seq151 Length=7550 Score = 329 bits (364), Expect = 6e-88 Identities = 262/314 (83%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||| || |||||||| | |||| ||| |||||| ||||| ||| |||||||| |||| Sbjct 1861 TGGTCTAGCTGGGCCTTTTCCTCTGCGGAACCGCATACCCTTTACTAGGTGTGCCAGGGA 1920 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||| ||||||||| ||| || | |||||||| | || ||||||| Sbjct 1921 AGCAGGACTTTTACTTTAAAAAAATTAAAGTACTCTAGGCAGGCCTATACTTAAATACAT 1980 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||| || ||||||||||||||||| | |||||||||||||| |||||||||||||| || Sbjct 1981 TAGTATAAAATAATAGAATAGGACGCGTGGTTCTATTTTGTTAGTTTCTAGGACCGCTGT 2040 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||| ||||||||||||||| |||| | |||||| |||| | |||||| |||||||| | Sbjct 2041 AATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAG 2100 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||| ||||||||||||| ||||| || |||||||||||||| ||| || || || Sbjct 2101 ATTTATTAAAGACTAACTACTATAAAAGCATTTACCAAGGATGTTTTTATTTATTAG-GA 2159 Query 305 ACGAAAGTTAGGGG 318 || ||||||||||| Sbjct 2160 ACAAAAGTTAGGGG 2173 >seq1538 Length=17301 Score = 297 bits (328), Expect = 3e-78 Identities = 255/314 (81%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||| ||| ||||||||| |||| || | | |||||||| ||| ||||||| ||||| Sbjct 15424 TGGTCTGGCTAGGCCTTTCCCTCTGTAGAACTGTATGCCCTTTACTAGGTGTGCTGGGGA 15365 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||| ||||||||||||| || | | |||||| | || ||||||| Sbjct 15364 AGCAGGACTTTTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCCTATACTTAAATACAT 15305 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||| || |||||||||||||||| | | ||| |||||| || ||||||||||| | | Sbjct 15304 TAGTATAGAATAATAGAATAGGATGCGTAGTTTTATTTTATTAGTTTCTAGGACTACTAT 15245 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||| ||||||||||||||| |||||| | |||||| |||| | ||||||||||||||| | Sbjct 15244 AATAATTAATAGGGATAGTTGGGGGTATTAGTATTTAATTATTAGAGGTGAAATTCTTAG 15185 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||| ||||||||||||| |||| || || ||||||||||| ||| || || || Sbjct 15184 ATTTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GA 15126 Query 305 ACGAAAGTTAGGGG 318 || |||||||| || Sbjct 15125 ACAAAAGTTAGAGG 15112 Score = 246 bits (272), Expect = 6e-63 Identities = 237/303 (78%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| ||| || | || ||||||||| || | | |||| || |||||| Sbjct 5893 GGCCTTTCCCTCTATAGAACTATATACCCTTCACTAAGTATACTAGGGAAGCAAGACTTT 5834 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| ||||||||| ||| || ||| |||||| | || |||| ||||| || |||| Sbjct 5833 TACTTTAAAAAAATTAAAGTACTCTAAGTAGGCCTATACTTAAATATATTAGTATAGAAT 5774 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||||||||||||| |||||||||| || ||||||||||| | |||| ||||||| Sbjct 5773 AATAGAATAGGACGCATAGTTCTATTTTATTAGTTTCTAGGACTACTATAATAATTAATA 5714 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| |||| | |||||| |||| | |||||| |||||||| |||||||| ||| Sbjct 5713 GGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 5654 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||| | ||||| || || || ||| |||| ||| || || ||| |||||||| Sbjct 5653 ACTAACTACTACAAAAGCATTTACTAAAGATATTTTTATTTATTAG-GAATAAAAGTTAG 5595 Query 316 GGG 318 ||| Sbjct 5594 GGG 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915160115584