Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2847 713 0.0 seq151 351 4e-94 seq1538 324 6e-86 >seq2847 Length=8172 Score = 713 bits (790), Expect = 0.0 Identities = 561/664 (84%), Gaps = 12/664 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 3497 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 3438 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3437 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 3378 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 3377 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 3318 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCACTCTTCTGCGG 261 | ||||||||||| | | || ||| || |||| | |||| || ||||| | | | | Sbjct 3317 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCCCTCGCGGCTGGGGCACTTTGCCG-GC 3259 Query 262 TCAGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 |||||||||||||||||| | ||| ||| ||| | ||||| || || | ||||| Sbjct 3258 ACAGGCCAGCATCAGCTCGCCGTCGG--GGACAAAAGTAGGGGGAACGTAGCTCTCTTCG 3201 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| |||||||||||| ||| | || | || ||||||| |||||||| || Sbjct 3200 GGGAGTGTTATAGCCCCCTACATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 3143 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||| | | Sbjct 3142 AGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 3083 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | | |||||||||||||||||||||||| | ||||||||||||||||||| ||||| || Sbjct 3082 TTATGTGCGAGTGTTTGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 3023 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3022 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 2967 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | | |||||||||||| |||||||||||| || |||||||||||||||||||||| Sbjct 2966 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 2907 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||||||||||||||| ||||||||||||||||||||| || | || ||| Sbjct 2906 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 2847 Query 680 GCGA 683 |||| Sbjct 2846 GCGA 2843 >seq151 Length=7550 Score = 351 bits (388), Expect = 4e-94 Identities = 474/655 (72%), Gaps = 8/655 (1%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| ||| | || |||| ||||||| |||||| Sbjct 4066 AAGCTCCTTTAATAAGTTAAGTAGTTTAAAAATACTACTTAAAATAGGAGGTATATTTCT 4125 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||||| | ||||||||| || |||||| || Sbjct 4126 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGTATAAGTAGAGTAATTAAAAGATAAA 4185 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| || | | |||||||| |||||||||||||| || Sbjct 4186 AAGCACTTTAAAAAGAGGGTTAAATAGTATATAAAATTGTTAAAAGGGAAGCGCTTATAA 4245 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265 | |||||| | | ||| | | | |||| | |||| | ||||| | || | || Sbjct 4246 CTAGACTTACGCCTAGTGAATTACCTAGCCCTTGCGGCTAGGGCACTTTGCTAGTAT-AG 4304 Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325 || || || |||| | ||||||| | ||||| || || | ||| ||| || Sbjct 4305 GCTAGTATTAGCTTGCTATTAGGGATAAAAGTAGGGGGAACGTAGCTCTCTTTAGGGAGT 4364 Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 ||||||||| ||| | | || || |||| ||||| ||||| Sbjct 4365 ATTATAGCCCCCTACATAATACCCTTTAGCAGG-CTAAGGTATACGCTCTATA-AGGATA 4422 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 || ||||||| ||| |||| ||| ||||| ||||||||| |||||||| | | | | | Sbjct 4423 CTAGCGTAATAGTTACTAGCGACCCATCTTGAAACACGGACTAAGGAGTCAACCTTATGT 4482 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 | |||||||| ||||| |||||| | ||||||||||||||||||| ||||| || | Sbjct 4483 GTGAGTGTTTAGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGAGCTTT- 4541 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 |||| | || ||| |||| | |||| | ||| ||||| |||||||| ||| | Sbjct 4542 ---GGTGTATTATTGACTGATCTTAATGTTCTTAGATAGATTTAAGTAAGAGTATATAGG 4598 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 | |||| ||||| ||| |||||||| || ||||||| |||| ||||||||||||||| Sbjct 4599 GTTAGACCTAAAAGAAGGTAAACTATGCGTGTATAGGGTAAAGCTAGAGGAAACTCTGGT 4658 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||| |||| ||||||| |||| |||| ||| | |||| || |||||||| Sbjct 4659 GGAGGCTTGCAGTGGTTCTGACGTGTAAATTGATTATTAAATATGCATATAGGGG 4713 >seq1538 Length=17301 Score = 324 bits (358), Expect = 6e-86 Identities = 473/659 (72%), Gaps = 10/659 (2%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| |||| | ||| |||| ||||||| |||||| Sbjct 13219 AAGCTCCTTTAATAAGTTAAGTAGTTTAAGAATACTGCTTAAAATAGGAGGTATATTTCT 13160 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||| ||||||||| || |||||| |||||| | ||||||||| || |||||| || Sbjct 13159 TCTAAAACTAAATATTAGCTAGAGACTAATAGCGTATAAGTAGAGTAATTAAAAGATAAA 13100 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| ||||| |||||| |||||| || | | ||||| || |||||||||| ||| | Sbjct 13099 AAGTACTTTAAAAAGAGGGTTAAATAGTATATAAAATTATTAAAAGGGAAGCACTTATGA 13040 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265 | |||||| | | ||| ||| | |||| | |||| | ||||| | ||| | ||| Sbjct 13039 CTAGACTTACGCCTAGTGAATCACCTAGCCCTTACGGCTAGGGCACTTTGCTG-GCACAG 12981 Query 266 GCCAGCATCAGCTCGGGCGGTCGG-ATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324 || ||||| |||| || | || ||||| | |||||| | || | ||| ||| | Sbjct 12980 GCTAGCATTAGCTTAC-CGTTAGGGATAAAAGTAGGGGGAATATAGCTCTCTTTAGGGAG 12922 Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384 ||||||||||| ||| | | ||| || |||| ||||||| || || Sbjct 12921 TGTTATAGCCCCCTACATAATACCCTTTGG-TGGGCTAAGGTATACGCTCCGTA-AGAAT 12864 Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444 ||| ||||||| ||| ||| || |||| |||| ||| ||||||| | | | || Sbjct 12863 GCTAGCGTAATAGTTACTAGCAACCTATCTTAAAACATAGACTAAGGAGTTAACCTTATA 12804 Query 445 TGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG 504 || ||||||| ||||| |||||| | || |||||||||||||||| ||||| || | Sbjct 12803 TGTAAGTGTTTAGGTGTTAAACCCCTACGTGTAATGAAAGTGAACGTAGGTGAGAGCT-- 12746 Query 505 TGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCT 564 | || || | || || ||||| || | | ||||||||| |||||||| ||| Sbjct 12745 TTAGTGT--ATTATTAACTAATCCTAATATTCTTAGATGGATTTAAGTAAGAGTATATAG 12688 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 | | ||||| ||||| ||| ||||||| || ||||||| |||| |||||||||||| | Sbjct 12687 GGTTGGACCTAAAAGAAGGTAAACTATGTGTGTATAGGGTAAAGCTAGAGGAAACTCTAG 12628 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||||||||| | || ||||| || || |||| | |||||||| || Sbjct 12627 TGGAGGCTTACAGCGGTTCTAACATGTAAATCAATTGTTAAATATATATATAGGGGTGA 12569 Score = 239 bits (264), Expect = 2e-60 Identities = 452/658 (69%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| ||| | || |||| | ||||| |||| | Sbjct 3699 AAGCTCCTTTAATAAGTTAAGTAGTTTAAAAATACTACTTAAAATAGAAGGTATATTTTT 3640 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || | |||| |||||||| ||||||||| || |||||| || Sbjct 3639 TCTAAAGCTAAATATTAGCTAAAGACTAATAGCGCATAAGTAGAGTAATTAAAAGATAAA 3580 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| ||||| |||||| |||||| ||||| | ||||| || |||||||||||||| || Sbjct 3579 AAGTACTTTAAAAAGAGGGTTAAATAGCACATAAAATTATTAAAAGGGAAGCGCTTATAA 3520 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265 | |||||| | | ||| | | | |||| | |||| | | ||| || | | || Sbjct 3519 CTAGACTTACGCCTAGTAAATTACCTAGCCCTTGCGGCTAGGGTACT-TTATTAGTATAG 3461 Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325 || ||||| |||| ||||||| | |||||| | || | ||| ||| || Sbjct 3460 GCTAGCATTAGCTTACCATTAGGGATAAAAGTAGGGGGAATATAGCTCTCTTTAGGGAGT 3401 Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 ||||||||| | ||| | | | | || |||| || | | | ||| Sbjct 3400 ATTATAGCCCCCTATATAATAC-CCTTTAGTAGGCTAAGGTATATACT-CTACAAAGATA 3343 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 || ||||||| ||| || || |||| |||| ||| ||||||| | | | ||| Sbjct 3342 CTAGCGTAATAGTTACTAGTAACCTATCTTAAAACATAGACTAAGGAGTTAACCTTATAT 3283 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||| ||| | |||||| | | |||| ||||| || | || || | | Sbjct 3282 ATAAGTGTTTAGGTATTAAACCCCTATACATAATAAAAGTAAATATAAGT--AAAAGCTT 3225 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 || || | || || ||||| || | | ||| ||||| |||||||| ||| Sbjct 3224 TAGCGT--ATTATTAACTAATCCTAATATTCTTAGATAGATTTAAGTAAGAGTATATAGA 3167 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 | |||| ||||| ||| |||||| | | |||||||||||| ||||||||||||||| Sbjct 3166 GTTAGACCTAAAAGAAGGTAAACTATACGTATATAGGGTGAAGCTAGAGGAAACTCTGGT 3107 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||||||| ||| |||| |||||| |||| | ||||||||||| Sbjct 3106 GGAGGCTTGTAGCGGTTCTGACGTATAAATTGATCGTTAAATATACATATAGGGGCGA 3049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079906520900