Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2847 325 6e-87 seq151 205 1e-50 seq1538 152 8e-35 >seq2847 Length=8172 Score = 325 bits (360), Expect = 6e-87 Identities = 230/259 (89%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 4537 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 4596 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| || |||||||| |||| ||||| | ||||||||||||||||| || Sbjct 4597 ACCTGTTATTGCATCGCACTTCCATCGGCTT-AAGCCGAGAGTCCCTCTAAGAAGCCGGC 4655 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || ||||||||||| |||| || |||||||||||||||| |||| Sbjct 4656 GTACTGCCAAAG-CAATACGGGCTATTTAGTAGGTCAATGTCTCGTTCGTTATCGCAATT 4714 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 4715 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 4774 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 4775 AAAGAGCTCTCAATCTGTC 4793 >seq151 Length=7550 Score = 205 bits (226), Expect = 1e-50 Identities = 196/247 (79%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | |||||| |||||||| ||| |||| |||||||||||| |||||||| |||| Sbjct 3013 GCTCTATTAGTGTAACGCGCGTGTAGCCTAGAATATCTAAGGGCATTACAGACCTATTAT 2954 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 ||| | | ||||| ||| ||| |||| || |||||||||||||||| || | || | Sbjct 2953 TGCATTACACTTCTATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGTGTACTACTA 2895 Query 130 TAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || |||||||||| ||||||| |||| |||| |||||| |||||| ||||| Sbjct 2894 AAG-CAATATAGGCTATTTAGTAGGTTAATGTCTTGTTCATTATCGCAATTAAGTAGACA 2836 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||||||| || ||||||||| || || ||| |||||||| | ||| ||||||||||| Sbjct 2835 AATCACTCTACTAACTAAGAATAGCTATACACTACCACCCACAAAATTAAGAAAGAGCTC 2776 Query 249 TCAATCT 255 | ||||| Sbjct 2775 TTAATCT 2769 >seq1538 Length=17301 Score = 152 bits (168), Expect = 8e-35 Identities = 182/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | |||||| |||| || ||| |||| ||||||||| || | |||||| |||| Sbjct 4752 GCTCTATTAGTGTAACGCGTGTATAGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 4811 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 || | | |||| |||| ||| |||| || |||||||||||||||| ||| | || | Sbjct 4812 TGTATTACACTTTCATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGCATACTACTA 4870 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| |||||||||| ||||||| |||| || ||||| |||||| ||| || Sbjct 4871 AAGTAATATAGGCTATTTAGTAGGTTAATGTCTTATTTGTTATTATAATTAAGTAGATAA 4930 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 || |||| || ||||||||| || || || || ||| | | ||| ||||||||||| | Sbjct 4931 ATTACTCTACTAACTAAGAATAGCTATATACTACTACCTACAAAATTAAGAAAGAGCTCT 4990 Query 250 CAATCT 255 ||||| Sbjct 4991 TAATCT 4996 Score = 143 bits (158), Expect = 4e-32 Identities = 179/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | |||||| | | |||| |||||||| ||||||||| || | |||||| |||| Sbjct 14272 GCTCTATTAGTGTAACACACGTGTAGCCCAGAATATCTAAGGGTATTATAGACCTATTAT 14331 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 | | | ||||| ||| ||| |||| || |||||||||||||||| || || | Sbjct 14332 TATATTACACTTCTATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGTATATTACTA 14390 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| |||||||||| ||||||| |||| || |||| |||||| | |||| Sbjct 14391 AAGTAATATAGGCTATTTAGTAGGTTAATGTCTTATTTATTATTACAATTAAGTAAACAA 14450 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 || |||| || |||||| || || || ||| || ||||| | ||||||||||||||| | Sbjct 14451 ATTACTCTACTAACTAAAAATAGCTATACACTACTACCCACAAAATCAAGAAAGAGCTCT 14510 Query 250 CAAT 253 ||| Sbjct 14511 TAAT 14514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796766360598