Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq2847 325 6e-87
seq151 205 1e-50
seq1538 152 8e-35
>seq2847
Length=8172
Score = 325 bits (360), Expect = 6e-87
Identities = 230/259 (89%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4537 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 4596
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||||| || |||||||| |||| ||||| | ||||||||||||||||| ||
Sbjct 4597 ACCTGTTATTGCATCGCACTTCCATCGGCTT-AAGCCGAGAGTCCCTCTAAGAAGCCGGC 4655
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || ||||||||||| |||| || |||||||||||||||| ||||
Sbjct 4656 GTACTGCCAAAG-CAATACGGGCTATTTAGTAGGTCAATGTCTCGTTCGTTATCGCAATT 4714
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 4715 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 4774
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 4775 AAAGAGCTCTCAATCTGTC 4793
>seq151
Length=7550
Score = 205 bits (226), Expect = 1e-50
Identities = 196/247 (79%), Gaps = 3/247 (1%)
Strand=Plus/Minus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | |||||| |||||||| ||| |||| |||||||||||| |||||||| ||||
Sbjct 3013 GCTCTATTAGTGTAACGCGCGTGTAGCCTAGAATATCTAAGGGCATTACAGACCTATTAT 2954
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
||| | | ||||| ||| ||| |||| || |||||||||||||||| || | || |
Sbjct 2953 TGCATTACACTTCTATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGTGTACTACTA 2895
Query 130 TAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|| | || |||||||||| ||||||| |||| |||| |||||| |||||| |||||
Sbjct 2894 AAG-CAATATAGGCTATTTAGTAGGTTAATGTCTTGTTCATTATCGCAATTAAGTAGACA 2836
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
|||||||| || ||||||||| || || ||| |||||||| | ||| |||||||||||
Sbjct 2835 AATCACTCTACTAACTAAGAATAGCTATACACTACCACCCACAAAATTAAGAAAGAGCTC 2776
Query 249 TCAATCT 255
| |||||
Sbjct 2775 TTAATCT 2769
>seq1538
Length=17301
Score = 152 bits (168), Expect = 8e-35
Identities = 182/246 (74%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | |||||| |||| || ||| |||| ||||||||| || | |||||| ||||
Sbjct 4752 GCTCTATTAGTGTAACGCGTGTATAGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 4811
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
|| | | |||| |||| ||| |||| || |||||||||||||||| ||| | || |
Sbjct 4812 TGTATTACACTTTCATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGCATACTACTA 4870
Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| |||||||||| ||||||| |||| || ||||| |||||| ||| ||
Sbjct 4871 AAGTAATATAGGCTATTTAGTAGGTTAATGTCTTATTTGTTATTATAATTAAGTAGATAA 4930
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
|| |||| || ||||||||| || || || || ||| | | ||| ||||||||||| |
Sbjct 4931 ATTACTCTACTAACTAAGAATAGCTATATACTACTACCTACAAAATTAAGAAAGAGCTCT 4990
Query 250 CAATCT 255
|||||
Sbjct 4991 TAATCT 4996
Score = 143 bits (158), Expect = 4e-32
Identities = 179/244 (73%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | |||||| | | |||| |||||||| ||||||||| || | |||||| ||||
Sbjct 14272 GCTCTATTAGTGTAACACACGTGTAGCCCAGAATATCTAAGGGTATTATAGACCTATTAT 14331
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
| | | ||||| ||| ||| |||| || |||||||||||||||| || || |
Sbjct 14332 TATATTACACTTCTATTAGCTT-AAGCTAAGAGTCCCTCTAAGAAGCTAGTATATTACTA 14390
Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| |||||||||| ||||||| |||| || |||| |||||| | ||||
Sbjct 14391 AAGTAATATAGGCTATTTAGTAGGTTAATGTCTTATTTATTATTACAATTAAGTAAACAA 14450
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
|| |||| || |||||| || || || ||| || ||||| | ||||||||||||||| |
Sbjct 14451 ATTACTCTACTAACTAAAAATAGCTATACACTACTACCCACAAAATCAAGAAAGAGCTCT 14510
Query 250 CAAT 253
|||
Sbjct 14511 TAAT 14514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796766360598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |