Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2847 159 4e-37 seq151 102 1e-19 seq1538 98.7 1e-18 >seq2847 Length=8172 Score = 159 bits (176), Expect = 4e-37 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 5528 CTAGAAACCAACAAAATAGAACCACGCGTCCTATTCTATTATTCCATGCTAATGTATTCG 5587 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 5588 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGCTTCCCCGGCA 5647 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| | | || | ||| | || |||| | ||| Sbjct 5648 CACCCAGTGAAGGGCATGCGGTTCCGCAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 5707 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 5708 GTGAGGCGGACC 5719 >seq151 Length=7550 Score = 102 bits (112), Expect = 1e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| | | ||||||||||||||||| || |||||||||| Sbjct 2031 CTAGAAACTAACAAAATAGAACCACGCGTCCTATTCTATTATTTTATACTAATGTATTTA 1972 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | || ||| ||||||| | || |||||||||||| |||| ||| Sbjct 1971 AGTATAGGCCTGCCTAGAGTACTTTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCTGGCA 1912 Query 126 CACC 129 |||| Sbjct 1911 CACC 1908 >seq1538 Length=17301 Score = 98.7 bits (108), Expect = 1e-18 Identities = 108/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGG--ACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 |||||||| || |||||| ||||| |||||||||||||||| || |||||||||| Sbjct 15254 CTAGAAACTAATAAAATAAAACTACGCA--TCCTATTCTATTATTCTATACTAATGTATT 15311 Query 64 CGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCG 123 | || |||| | | || ||||||||||| | || |||||||||||| |||| | | Sbjct 15312 TAAGTATAGGCCTACCTAGAGTACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCCAG 15371 Query 124 CACACCAATGAA--GGCATAC 142 |||||| | || ||||||| Sbjct 15372 CACACCTAGTAAAGGGCATAC 15392 Score = 80.6 bits (88), Expect = 3e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||||||||||||||| || ||||| |||| Sbjct 5734 CTAGAAACTAATAAAATAGAACTATGCGTCCTATTCTATTATTCTATACTAATATATTTA 5793 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||| ||| || ||| ||||||| | || ||||||||| || |||| Sbjct 5794 AGTATAGGCCTACTTAGAGTACTTTAATTTTTTTAAAGTAAAAGTCTTGCTTCC 5847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595174871772