Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2847 264 1e-68 seq151 179 4e-43 seq1538 165 8e-39 >seq2847 Length=8172 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 5641 GGAAGCAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5582 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 5581 CATTAGCATGGAATAATAGAATAGGACGCGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 5523 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 5522 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 5463 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 5462 TTGGATTTATT 5452 >seq151 Length=7550 Score = 179 bits (198), Expect = 4e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| ||||||||| || || | |||||||| | || |||| Sbjct 1918 GGAAGCAGGACTTTTACTTTAAAAAAATTAAAGTACTCTAGGCAGGCCTATACTTAAATA 1977 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || ||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 1978 CATTAGTATAAAATAATAGAATAGGACGCGTGGTTCTATTTTGTTAGTTTCTAGGACCG- 2036 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | ||||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 2037 CTGTAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 2096 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2097 TTAGATTTATT 2107 >seq1538 Length=17301 Score = 165 bits (182), Expect = 8e-39 Identities = 152/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| || | | |||||| | || |||| Sbjct 15367 GGAAGCAGGACTTTTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCCTATACTTAAATA 15308 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || |||||||||||||||| | | ||| |||||| | |||||||||| | Sbjct 15307 CATTAGTATAGAATAATAGAATAGGATGCGTAGTTTTATTTTATTAGTTTCTAGGA-CTA 15249 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||||| | |||||| |||| | | ||||||||||| Sbjct 15248 CTATAATAATTAATAGGGATAGTTGGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 15189 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 15188 TTAGATTTATT 15178 Score = 147 bits (162), Expect = 2e-33 Identities = 148/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || |||||||||||| ||||||||| || || ||| |||||| | || |||| Sbjct 5847 GGAAGCAAGACTTTTACTTTAAAAAAATTAAAGTACTCTAAGTAGGCCTATACTTAAATA 5788 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||||||||||||| |||||||||| | |||||||||| | Sbjct 5787 TATTAGTATAGAATAATAGAATAGGACGCATAGTTCTATTTTATTAGTTTCTAGGA-CTA 5729 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 5728 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 5669 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 5668 TTAGATTTATT 5658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511978384320