Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2847 407 3e-111
seq151 226 5e-57
seq1538 179 7e-43
>seq2847
Length=8172
Score = 407 bits (450), Expect = 3e-111
Identities = 276/309 (89%), Gaps = 3/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||||| || |||| |||||||||| | |||||||| | ||||||||||||||
Sbjct 4702 GAACGAGACATTGACCTACTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 4643
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 4642 AGGGACTCTCGGCTTAAGCCGATGGAAGTGCGATGCAATAACAGGTCTGTGATGCCCTTA 4583
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| ||||||||| |||||| ||||| | |||||||||
Sbjct 4582 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTACT---CCTTGGCCG 4526
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4525 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 4466
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 4465 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 4406
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 4405 CCCTTTGTA 4397
>seq151
Length=7550
Score = 226 bits (250), Expect = 5e-57
Identities = 233/304 (77%), Gaps = 3/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||| ||||||| |||||||||| ||||| | | | | ||||||||||||||
Sbjct 2862 AGACATTAACCTACTAAATAGCCTATATTGCTTTAGTAGTACACTAGCTTCTTAGAGGGA 2921
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|| | ||| |||| || ||||| | | ||||||| |||||||| |||||||||||| |
Sbjct 2922 CTCTTAGCTTAAGCTAATAGAAGTGTAATGCAATAATAGGTCTGTAATGCCCTTAGATAT 2981
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| |||||||| |||||| | ||||| | ||| | |||| || |||||
Sbjct 2982 TCTAGGCTACACGCGCGTTACACTAATAGAGCTAGTAAGTACT---CCTTAGCTAGAAGG 3038
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| |||||||| || || || ||||||||||||| ||||||||||||||
Sbjct 3039 CCTAGGTAATCTTATTAAACTCCGTTGTACTAGGGATAGAGCATTACAATTATTGCTCTT 3098
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| ||||||||| | || || ||| |||| ||||||||||| |||||
Sbjct 3099 TAATAAGGAATCCCTAGTAAGTGTAAGTTATTAGCTTACGTTAATTACGTCCCTACCCTT 3158
Query 325 TGTA 328
| ||
Sbjct 3159 TATA 3162
>seq1538
Length=17301
Score = 179 bits (198), Expect = 7e-43
Identities = 195/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||||| | ||| |||| || ||||| | | ||||| |||||| |
Sbjct 14377 GCTTCTTAGAGGGACTCTTAGCTTAAGCTAATAGAAGTGTAATATAATAATAGGTCTATA 14318
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| ||||||||| |||||||| |||| | | |||||| | ||||| | ||| |
Sbjct 14317 ATACCCTTAGATATTCTGGGCTACACGTGTGTTACACTAATAGAGCTAGTAAGTACT--- 14261
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||| ||||| || ||||||||| |||||||| || |||| |||||| || |||
Sbjct 14260 CCTTGGCTAGAAGGCCTAGGTAATCTTATTAAACTCCGTTATGCTAGGGATAAAGTATTA 14201
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| ||||| || |||||| ||||||||||| || || ||| |||| |||
Sbjct 14200 TAATTATTACTCTTTAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGTTAATT 14141
Query 311 ACGTCCCTGCCCTTTGTA 328
| |||||||||||| ||
Sbjct 14140 ATATCCCTGCCCTTTATA 14123
Score = 178 bits (196), Expect = 2e-42
Identities = 222/304 (73%), Gaps = 3/304 (1%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||| ||||||| |||||||||| |||| | | || ||||||||||||||
Sbjct 4903 AGACATTAACCTACTAAATAGCCTATATTACTTTAGTAGTATGCTAGCTTCTTAGAGGGA 4844
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|| | ||| |||| ||| |||| | | |||||| |||||| | || ||||||||| |
Sbjct 4843 CTCTTAGCTTAAGCTAATGAAAGTGTAATACAATAATAGGTCTATAATACCCTTAGATAT 4784
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| || |||| |||||| | ||||| | ||| | |||| || |||||
Sbjct 4783 TCTAGGCTATACACGCGTTACACTAATAGAGCTAGTAAGTACT---CCTTAGCTAGAAGG 4727
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||| | | || ||||||||| ||| ||||||| |||||
Sbjct 4726 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 4667
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| ||||||||||| || || ||| |||| |||| ||||| |||||
Sbjct 4666 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGTTAATTATATCCCTACCCTT 4607
Query 325 TGTA 328
| ||
Sbjct 4606 TATA 4603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947158721024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |