Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2847 407 3e-111 seq151 226 5e-57 seq1538 179 7e-43 >seq2847 Length=8172 Score = 407 bits (450), Expect = 3e-111 Identities = 276/309 (89%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||| || |||| |||||||||| | |||||||| | |||||||||||||| Sbjct 4702 GAACGAGACATTGACCTACTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 4643 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||| Sbjct 4642 AGGGACTCTCGGCTTAAGCCGATGGAAGTGCGATGCAATAACAGGTCTGTGATGCCCTTA 4583 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||| Sbjct 4582 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTACT---CCTTGGCCG 4526 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4525 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 4466 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 4465 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 4406 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 4405 CCCTTTGTA 4397 >seq151 Length=7550 Score = 226 bits (250), Expect = 5e-57 Identities = 233/304 (77%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||| ||||||| |||||||||| ||||| | | | | |||||||||||||| Sbjct 2862 AGACATTAACCTACTAAATAGCCTATATTGCTTTAGTAGTACACTAGCTTCTTAGAGGGA 2921 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 || | ||| |||| || ||||| | | ||||||| |||||||| |||||||||||| | Sbjct 2922 CTCTTAGCTTAAGCTAATAGAAGTGTAATGCAATAATAGGTCTGTAATGCCCTTAGATAT 2981 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| |||||||| |||||| | ||||| | ||| | |||| || ||||| Sbjct 2982 TCTAGGCTACACGCGCGTTACACTAATAGAGCTAGTAAGTACT---CCTTAGCTAGAAGG 3038 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| |||||||| || || || ||||||||||||| |||||||||||||| Sbjct 3039 CCTAGGTAATCTTATTAAACTCCGTTGTACTAGGGATAGAGCATTACAATTATTGCTCTT 3098 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||| | || || ||| |||| ||||||||||| ||||| Sbjct 3099 TAATAAGGAATCCCTAGTAAGTGTAAGTTATTAGCTTACGTTAATTACGTCCCTACCCTT 3158 Query 325 TGTA 328 | || Sbjct 3159 TATA 3162 >seq1538 Length=17301 Score = 179 bits (198), Expect = 7e-43 Identities = 195/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| | ||| |||| || ||||| | | ||||| |||||| | Sbjct 14377 GCTTCTTAGAGGGACTCTTAGCTTAAGCTAATAGAAGTGTAATATAATAATAGGTCTATA 14318 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||| |||||||| |||| | | |||||| | ||||| | ||| | Sbjct 14317 ATACCCTTAGATATTCTGGGCTACACGTGTGTTACACTAATAGAGCTAGTAAGTACT--- 14261 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||| ||||| || ||||||||| |||||||| || |||| |||||| || ||| Sbjct 14260 CCTTGGCTAGAAGGCCTAGGTAATCTTATTAAACTCCGTTATGCTAGGGATAAAGTATTA 14201 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||| || |||||| ||||||||||| || || ||| |||| ||| Sbjct 14200 TAATTATTACTCTTTAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGTTAATT 14141 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||| || Sbjct 14140 ATATCCCTGCCCTTTATA 14123 Score = 178 bits (196), Expect = 2e-42 Identities = 222/304 (73%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||| ||||||| |||||||||| |||| | | || |||||||||||||| Sbjct 4903 AGACATTAACCTACTAAATAGCCTATATTACTTTAGTAGTATGCTAGCTTCTTAGAGGGA 4844 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 || | ||| |||| ||| |||| | | |||||| |||||| | || ||||||||| | Sbjct 4843 CTCTTAGCTTAAGCTAATGAAAGTGTAATACAATAATAGGTCTATAATACCCTTAGATAT 4784 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| || |||| |||||| | ||||| | ||| | |||| || ||||| Sbjct 4783 TCTAGGCTATACACGCGTTACACTAATAGAGCTAGTAAGTACT---CCTTAGCTAGAAGG 4727 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || ||||||||| ||| ||||||| ||||| Sbjct 4726 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 4667 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| || || ||| |||| |||| ||||| ||||| Sbjct 4666 TAATAAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGTTAATTATATCCCTACCCTT 4607 Query 325 TGTA 328 | || Sbjct 4606 TATA 4603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947158721024