Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq2847 224 2e-56
seq151 163 5e-38
seq1538 125 1e-26
>seq2847
Length=8172
Score = 224 bits (248), Expect = 2e-56
Identities = 223/282 (79%), Gaps = 14/282 (5%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 758 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 701
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 700 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 641
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | ||| || ||| |||| | || ||| |||||||||||||||| |
Sbjct 640 GAACGCGACGATACT-TCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 583
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | || | || |||||| | | | | | | ||| ||
Sbjct 582 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 529
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| || | || ||| |||||||||||||||||||
Sbjct 528 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 487
>seq151
Length=7550
Score = 163 bits (180), Expect = 5e-38
Identities = 143/173 (83%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | || ||| ||||||||||||||||||||| |||| ||||||
Sbjct 6801 GTACAAGAGGAACCGCTCATTT-AGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6858
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||| |||| || ||| ||||||||||||||||||||||||||| || | |
Sbjct 6859 GCCGCGACGCTACTATCTACTAGATAATGGCTGAACGCCTCTAAGTCAGAATCTATACTA 6918
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173
||||| | ||| || ||| |||| | ||| || |||||||||||| |||
Sbjct 6919 GAACGCGACGATACT-TCCCGCACGT-ATAGATAGACACGAATAGGCTTTGGC 6969
>seq1538
Length=17301
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||||||| | |||||| ||||| ||||||| ||||||||||| || |||||| |
Sbjct 10479 AGAGGAACCGCTTA-TTCAGA-TAATTAGTTTTTGTGGCTGTCTGACTGGGTAGTGCCAC 10422
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||||| ||||||| ||| || |||||| ||||||||||||||||| || | |||| |
Sbjct 10421 GACGCTACTATCTGCTAGATAATAGCTGAATGCCTCTAAGTCAGAATCTATACTAGAATG 10362
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185
| || || ||||| || | ||| | || ||||||||| || | | |||||
Sbjct 10361 TAATAATACT-TCCTGTACGT-ATAGATAAACACAAATAGGCTTTAGCTTAGCATCTTAG 10304
Query 186 CAGGC 190
|||||
Sbjct 10303 CAGGC 10299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819165414912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |