Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2847 224 2e-56 seq151 163 5e-38 seq1538 125 1e-26 >seq2847 Length=8172 Score = 224 bits (248), Expect = 2e-56 Identities = 223/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 758 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 701 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 700 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 641 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| || ||| |||| | || ||| |||||||||||||||| | Sbjct 640 GAACGCGACGATACT-TCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 583 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 582 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 529 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| ||||||||||||||||||| Sbjct 528 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 487 >seq151 Length=7550 Score = 163 bits (180), Expect = 5e-38 Identities = 143/173 (83%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | || ||| ||||||||||||||||||||| |||| |||||| Sbjct 6801 GTACAAGAGGAACCGCTCATTT-AGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6858 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||| |||| || ||| ||||||||||||||||||||||||||| || | | Sbjct 6859 GCCGCGACGCTACTATCTACTAGATAATGGCTGAACGCCTCTAAGTCAGAATCTATACTA 6918 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173 ||||| | ||| || ||| |||| | ||| || |||||||||||| ||| Sbjct 6919 GAACGCGACGATACT-TCCCGCACGT-ATAGATAGACACGAATAGGCTTTGGC 6969 >seq1538 Length=17301 Score = 125 bits (138), Expect = 1e-26 Identities = 142/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||||| | |||||| ||||| ||||||| ||||||||||| || |||||| | Sbjct 10479 AGAGGAACCGCTTA-TTCAGA-TAATTAGTTTTTGTGGCTGTCTGACTGGGTAGTGCCAC 10422 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||||| ||||||| ||| || |||||| ||||||||||||||||| || | |||| | Sbjct 10421 GACGCTACTATCTGCTAGATAATAGCTGAATGCCTCTAAGTCAGAATCTATACTAGAATG 10362 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185 | || || ||||| || | ||| | || ||||||||| || | | ||||| Sbjct 10361 TAATAATACT-TCCTGTACGT-ATAGATAAACACAAATAGGCTTTAGCTTAGCATCTTAG 10304 Query 186 CAGGC 190 ||||| Sbjct 10303 CAGGC 10299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819165414912