Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2847 771 0.0 seq1538 421 2e-115 seq151 412 1e-112 >seq2847 Length=8172 Score = 771 bits (854), Expect = 0.0 Identities = 474/504 (94%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 5855 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATCGTCACTACCT 5914 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5915 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 5974 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| || Sbjct 5975 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCTA 6034 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 6035 GAACACTACTCTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 6094 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 6095 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 6154 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6155 TTTTAATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 6214 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 6215 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 6274 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 6275 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6333 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 6334 AGACAAGCATATGACTACTGGCAG 6357 >seq1538 Length=17301 Score = 421 bits (466), Expect = 2e-115 Identities = 393/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||| Sbjct 15582 TACTTATTCTAATTACAAGACCTAAAAGAGCCCTATATTAGTATTTATTGTTACTACCTC 15641 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||| ||||| |||||||| ||||| || |||||||| ||| | ||||| ||| Sbjct 15642 CCTATGTTAGGATTAGGTAATTTATACGCCTACTACCTTCCTTAGATATAGTAGCTATTT 15701 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||| |||| | | | |||||| | | |||||| || || || ||| Sbjct 15702 CTTAGGCTCCTTCTCTAGGGTTAAGCCCTAACCCTCTATTACCCATTATAACTATACTAG 15761 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||||| ||| |||| |||||| |||||| |||||||| ||| |||||| || || Sbjct 15762 AACACTACTCTAGCATCAAAAGTTAATAGGGAAGAAATTTAAATAAACCATTGCTAGCGT 15821 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| |||||||| ||||| |||||| || ||| Sbjct 15822 AAGGCTATATAATTTAAGAAGTTATTATAAATCACCAGTAAGCCCTAAAGGGCATTAGTT 15881 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| |||||||| | || |||||||||| || ||||||||||||| Sbjct 15882 TTTAATCTAATAAATATACCCCTTCTAAGGTTAGGGTTTTTAGTATATATTAGCTCTAGA 15941 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 15942 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 16001 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||||||| |||| ||| ||||||||||||||| || ||||||||||| | Sbjct 16002 CTATTTATAGTTTCACTATATA-ATTACTTATACTTAGACATATATAGCTTAATCTTTAA 16060 Query 482 GACAAGCATATGACTACT 499 ||||||||||| |||||| Sbjct 16061 GACAAGCATATAACTACT 16078 Score = 345 bits (382), Expect = 1e-92 Identities = 376/498 (76%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| ||||||||||| ||| |||||||||| | |||||||| Sbjct 6062 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAGTATTTATTATTACTACCTC 6121 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || || | ||||| |||||||| ||||| || |||||||| ||| | ||||| ||| Sbjct 6122 CCTGTATTAGGATTAGGTAATTTATACGCCTACTACCTTCCTTAGATATAGTAGCTATTT 6181 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||| |||| | | | |||||| | | ||||| || || || || Sbjct 6182 CTTAGGCTCCTTCTCTAGGGTTAAGCCCTAACCCTCTATTACCTATTATAACTATACTAA 6241 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| ||| || |||||| |||||| |||||||| ||| ||| || || || Sbjct 6242 AATACTACTCTAGTATTAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTGCTAGCGT 6301 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| || | ||||| ||||| || ||| Sbjct 6302 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCCCTAAAGGGTATTAGTT 6361 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| || ||||||||| |||||||| |||| |||||||||| || ||||||||||| | Sbjct 6362 TTTAATTTAATAAATATACCCCTTCTAAAGTTAGGGTTTTTAGTATATATTAGCTCTAAA 6421 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 6422 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 6481 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| || |||| ||| |||||||||||| || || ||||||||||| | Sbjct 6482 CTATTTATAGTTTTGCTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 6540 Query 482 GACAAGCATATGACTACT 499 || ||| |||| |||||| Sbjct 6541 GATAAGTATATAACTACT 6558 >seq151 Length=7550 Score = 412 bits (456), Expect = 1e-112 Identities = 391/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| ||||||||||| ||| ||||||||| ||||||||||| Sbjct 1703 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAGTATTTATCGTCACTACCTC 1644 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||| ||||| ||||||| ||||||||||||||||| ||| | |||||||||| Sbjct 1643 CCTATGTTAGGATTAAGTAATTTATACGCCTGCTGCCTTCCTTAGATATAGTAGCCGTTT 1584 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||| |||| | | | || ||| | |||||||| || || || ||| Sbjct 1583 CTTAGGCTCCTTCTCTAGGGTTAAGCCTTAACCCTCCGTTACCTATTATAACTATACTAG 1524 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| ||| ||| |||||| |||||| |||||||| ||| ||| ||||| || | Sbjct 1523 AATACTACTCTAGCATTAAAAGTTAATAGGGAAGAAATTTAAATAAACTATCGCTAGCGC 1464 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 |||||||| | ||| |||||||||| |||||| | |||| ||||| || ||| Sbjct 1463 AAGGCCATACAATTTAAGAAGTTATTATAAATCACTAGTAAGCCTTAAAGGGTATTAGTT 1404 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| |||||||| |||| |||||||||| || ||||||||||||| Sbjct 1403 TTTAATCTAATAAATATACCCCTTCTAAAGTTAGGGTTTTTAGTATATATTAGCTCTAGA 1344 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| || |||||| | ||||||||||||||| |||||||| |||||| || |||| || Sbjct 1343 ATTACTACAGTTATCTAAGTAGTAAGGTACTATTAAATAAACAATAACTTATATAATAAG 1284 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| | ||||| ||| |||| ||| |||||||||||| || || ||||||||||| | Sbjct 1283 CTATTTGTAGTTTTACTATATA-ATTACTTATACTTAGATATATATAGCTTAATCTTTAA 1225 Query 482 GACAAGCATATGACTACT 499 | ||| |||| | |||| Sbjct 1224 AATAAGTATATAATTACT 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510334176768