Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq245 228 6e-55 seq3337 158 1e-33 >seq245 Length=98725 Score = 228 bits (252), Expect = 6e-55 Identities = 550/828 (66%), Gaps = 16/828 (2%) Strand=Plus/Minus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| || ||||| || || |||||||| || || | ||| ||||||||| ||||| | Sbjct 90141 TGGGCAGCGCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAA 90082 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || || ||||| || || | || ||||| |||| |||| || || ||||||| Sbjct 90081 TGATCTCAGTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGC 90022 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||| ||||||||||| | ||| | || | || ||||| ||| | ||| | || Sbjct 90021 GGTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGA 89962 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC------GTT 66233 |||| | ||| || | ||||| | || | || |||||||| | | Sbjct 89961 TGGCATACCAGAGCTTTTGGGCCTTTAGGGTC--TTGCG----ACCTTTGCCCATCTGCT 89908 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | ||||| ||| ||||| || || | |||| |||| || |||| Sbjct 89907 CGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACT 89848 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 || || ||||| || | ||| || || | || || || | ||| || ||||| | Sbjct 89847 CGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGG 89788 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | |||||||||||| || || || || || || |||||| | || || || |||| Sbjct 89787 GGATCCAGAGGGCGAGAAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGC 89728 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 ||| || | ||| ||||| | || || ||||| || || ||||||||||| || | | Sbjct 89727 GCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCAC 89668 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || ||| || || |||||||||||||| || |||||||||||||| | || Sbjct 89667 CGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCA 89608 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || |||| |||||||| |||| |||||||| | ||| || || || || | Sbjct 89607 TGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGA 89548 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGC 66651 | ||| || || |||||||| ||||| ||| |||| ||||| |||||| || | Sbjct 89547 TGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGA 89488 Query 66652 CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACT 66711 |||| | | || || || || ||||| |||| || | ||| | || || Sbjct 89487 GGGTGTC--GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGA 89430 Query 66712 AAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATG 66771 || || | | ||| || |||| |||||| ||||| | ||||| || ||| | | Sbjct 89429 CAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTT 89370 Query 66772 GCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 || ||||| ||||| |||||||| || |||| ||| ||||| Sbjct 89369 GCTCGACATCAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCC 89322 Score = 122 bits (134), Expect = 7e-23 Identities = 331/497 (67%), Gaps = 20/497 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | ||||| |||| || | || ||||||||||| ||| Sbjct 91045 TCGACAGTGAACTGAATAGGCGCTGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 90986 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 || || || ||| ||| || ||| ||||| | || | || |||| | | |||| | Sbjct 90985 TTCAGTCCGAGCTT-CCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTCGGGT 90928 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | |||||| ||| |||||| | ||||| || ||||||| Sbjct 90927 CTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCA 90868 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | ||| | | || | || || ||||| || ||||||||||| || | | ||| Sbjct 90867 TTTGCACAACGGTGCGCTGG---GAGATTTCCCAAACAGTCTTGTACAG-CGCCTTGACC 90812 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || | ||||| | |||| ||| | ||||| ||||| ||||| || | Sbjct 90811 TCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATGCGGTTCTTC 90752 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGAT 65427 || | || |||||||| |||| |||| || | | || ||||| | |||| Sbjct 90751 ATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTCAAGAGCCAAGGG----TTGAC 90696 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 ||||||||||||||| | || |||||||| || |||||||| ||| ||||| || Sbjct 90695 GACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAA 90636 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | || |||| || | || || | || ||||| |||||||| ||||| | || Sbjct 90635 GCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAG 90576 Query 65548 TGAGTTTCGCAATCCGT 65564 ||||| || | |||| Sbjct 90575 AGAGTTGCGGACACCGT 90559 >seq3337 Length=46210 Score = 158 bits (174), Expect = 1e-33 Identities = 218/301 (72%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | || ||| Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || || | |||||| | | | | |||| | ||| | | ||||| Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAG-GATGAGAAGTACTTCATCTC 4886 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || |||||||||||||| ||||| |||||||||||||| || | || || Sbjct 4885 GCACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 4826 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | ||||| |||||| | || || || |||||||| |||||||||||| | Sbjct 4825 CTTCA-GCGGCGAGGTTCAAGTGCCCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATGA 4767 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| |||| || |||| ||| | |||||||| || ||||||| ||||| || Sbjct 4766 TGGAGAACATCCATTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGAGCCGG 4707 Query 61382 C 61382 | Sbjct 4706 C 4706 Score = 131 bits (144), Expect = 1e-25 Identities = 295/438 (67%), Gaps = 9/438 (2%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | |||||||| | || || ||||| | || || | ||||| ||| | Sbjct 4527 GCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTC 4468 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || ||||| |||||||||||| ||| ||| | || || || |||||| Sbjct 4467 AAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 4408 Query 61618 GGCATGCATTGTGATTTTGC-TGTTT-TGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 || |||| || || || ||| | | ||||| || || ||| || || Sbjct 4407 GGTCTGCACACCGACTTCGCCTGTCTCTTGTATTCCCAC-----CTCAAGAACCGCCCCA 4353 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 || || | | | || || || || || || | || || ||||| || |||| Sbjct 4352 GCAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGA 4293 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || ||| | || | | || |||||||||| | || ||| |||||| |||| Sbjct 4292 CGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTG 4233 Query 61796 AATTTGTTGCCGACCGTCT-GTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854 | || |||||||||||||| ||| | |||| | ||| || |||| || | Sbjct 4232 AGTTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGG-TCTACAAGTCTTCC 4174 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || |||||||| | || || |||| |||||||| || || |||||||| Sbjct 4173 AACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 4114 Query 61915 CGTGTAGGCGACTATCAA 61932 ||||| | |||||| ||| Sbjct 4113 CGTGTTGCCGACTACCAA 4096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397546883921120