Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq830 131 4e-28 >seq830 Length=12426 Score = 131 bits (144), Expect = 4e-28 Identities = 201/284 (71%), Gaps = 17/284 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 2403 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 2344 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 2343 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 2284 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC---TT------CGCG 177 || | | |||| ||||||| || ||||||| ||| |||| | | || Sbjct 2283 CCCTCA-CGTTAAGGCCGCCATTAACCGGGGGTTCCTTCAACACCAAATTTTTTAATAAT 2225 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 |||| ||| ||| |||||| |||| | ||||||| | |||||| | |||| || | Sbjct 2224 TTAGTTAA----ATCCGTTAACCAGCCGGGATCGGGCAGACATCACACTCAATACATCGA 2169 Query 238 CTTT---CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| | ||||| ||||||| |||||| | |||||||||| Sbjct 2168 TTTTTAATCTTTTTGCGGAGTGCTTTGTTTTAATTAAACAGTCG 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260780281088