Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq307 558 1e-156
seq1227 230 8e-58
seq1554 77.0 1e-11
>seq307
Length=625
Score = 558 bits (618), Expect = 1e-156
Identities = 403/461 (87%), Gaps = 7/461 (2%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 459 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 400
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 399 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 340
Query 127 GGCCCGCGAAGGAC---CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCA 182
| || | || | | ||| ||| ||| || || | || | |||| ||||
Sbjct 339 GACCAACAAAAGTCGGCCTTGGATCCAAAAAGAGG--GGCAGCGCCCCGCCTCCGATTCA 282
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241
|| ||||||||| |||| ||| ||||||||||||||||| ||| | | ||||||
Sbjct 281 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCTGTTTCCAGCTCCC 222
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 162
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 161 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 102
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 42
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462
|||||||||||||||||||||||||||||||||||||||||
Sbjct 41 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 1
>seq1227
Length=1636
Score = 230 bits (254), Expect = 8e-58
Identities = 127/127 (100%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 60
Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 120
Query 529 CAACATC 535
|||||||
Sbjct 121 CAACATC 127
>seq1554
Length=202218
Score = 77.0 bits (84), Expect = 1e-11
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||
Sbjct 126329 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 126288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635174425472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |