Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2520 260 2e-67 seq1839 86.0 9e-15 seq1664 78.8 1e-12 >seq2520 Length=6748 Score = 260 bits (288), Expect = 2e-67 Identities = 198/229 (86%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 2395 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 2338 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 2337 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 2278 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | |||||||| |||||||||| Sbjct 2277 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAACGCGCGTGCG 2220 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2219 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCGCACTTCC 2171 >seq1839 Length=9459 Score = 86.0 bits (94), Expect = 9e-15 Identities = 158/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || ||| |||||||||||| | ||| |||| || ||| ||||||| | ||| || Sbjct 4618 TATAAAAGGCAGGGACGTAATTAACATAAGCTA-ATAACTTATACTTACTAAGGATT-CC 4675 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || || | || |||| ||| | |||||| | ||| | | ||| | ||||||| Sbjct 4676 TTATTAAAAAGTAATAATTATAATACTTTATCCCTAGCACAACAGAGTTTAACAAGATTA 4735 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | ||| || |||| || || | | | | |||||| ||||||||||| Sbjct 4736 CCTAGGCCTTCTAGCTAAGGGAGTA--CTTACTAGCTCCGTTAGTGTAACGCGCGTGCGG 4793 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || |||| |||||| ||||| |||||||| ||||| ||| | ||||| Sbjct 4794 CCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTACACTTC 4840 >seq1664 Length=10504 Score = 78.8 bits (86), Expect = 1e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 160 ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 || ||| || ||||||||||||| |||| ||||||||| || |||||||||||||| ||| Sbjct 7010 ATTAGTATAACGCGCGTGCGGCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCT 7069 Query 220 CAAACTTC 227 | ||||| Sbjct 7070 TATACTTC 7077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751938405325