Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq2520 260 2e-67
seq1839 86.0 9e-15
seq1664 78.8 1e-12
>seq2520
Length=6748
Score = 260 bits (288), Expect = 2e-67
Identities = 198/229 (86%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 2395 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 2338
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 2337 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 2278
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||| ||||||||||
Sbjct 2277 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAACGCGCGTGCG 2220
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2219 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCGCACTTCC 2171
>seq1839
Length=9459
Score = 86.0 bits (94), Expect = 9e-15
Identities = 158/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|| ||| |||||||||||| | ||| |||| || ||| ||||||| | ||| ||
Sbjct 4618 TATAAAAGGCAGGGACGTAATTAACATAAGCTA-ATAACTTATACTTACTAAGGATT-CC 4675
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
| || || | || |||| ||| | |||||| | ||| | | ||| | |||||||
Sbjct 4676 TTATTAAAAAGTAATAATTATAATACTTTATCCCTAGCACAACAGAGTTTAACAAGATTA 4735
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|| | ||| || |||| || || | | | | |||||| |||||||||||
Sbjct 4736 CCTAGGCCTTCTAGCTAAGGGAGTA--CTTACTAGCTCCGTTAGTGTAACGCGCGTGCGG 4793
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
|| |||| |||||| ||||| |||||||| ||||| ||| | |||||
Sbjct 4794 CCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTACACTTC 4840
>seq1664
Length=10504
Score = 78.8 bits (86), Expect = 1e-12
Identities = 58/68 (85%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 160 ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219
|| ||| || ||||||||||||| |||| ||||||||| || |||||||||||||| |||
Sbjct 7010 ATTAGTATAACGCGCGTGCGGCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCT 7069
Query 220 CAAACTTC 227
| |||||
Sbjct 7070 TATACTTC 7077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751938405325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |