Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2520 172 3e-41 seq1839 71.6 8e-11 >seq2520 Length=6748 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1869 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 1811 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1810 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1754 >seq1839 Length=9459 Score = 71.6 bits (78), Expect = 8e-11 Identities = 79/104 (76%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||| |||||| |||||||| | ||| |||| ||||||| | ||||||||| Sbjct 5153 ACTTTAATTTCTTATAAGGTGCTAAATAAGTTAAAAA-ATAACATTATCTAATCCCTAGT 5211 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 | |||||||| ||||||||||| || |||||| || ||||| Sbjct 5212 TAGTATAGTTTATAGTTAAGACTACAACAGTATCTAATTGTCTT 5255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278377932450