Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq2520 172 3e-41
seq1839 71.6 8e-11
>seq2520
Length=6748
Score = 172 bits (190), Expect = 3e-41
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1869 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 1811
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1810 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1754
>seq1839
Length=9459
Score = 71.6 bits (78), Expect = 8e-11
Identities = 79/104 (76%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70
||||| |||||| |||||||| | ||| |||| ||||||| | |||||||||
Sbjct 5153 ACTTTAATTTCTTATAAGGTGCTAAATAAGTTAAAAA-ATAACATTATCTAATCCCTAGT 5211
Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114
| |||||||| ||||||||||| || |||||| || |||||
Sbjct 5212 TAGTATAGTTTATAGTTAAGACTACAACAGTATCTAATTGTCTT 5255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278377932450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |