Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq198 140 8e-31 >seq198 Length=39678 Score = 140 bits (154), Expect = 8e-31 Identities = 203/284 (71%), Gaps = 17/284 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 3209 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 3150 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 3149 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 3090 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC------TTCGCG--- 177 || | | |||| ||||||| || ||||||| ||| |||| | | || | | Sbjct 3089 CCCTCA-CGTTAAGGCCGCCATTAACCGGGGGTTCCTTCAACACCAAACTTTTTGAGAAT 3031 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 |||| ||| || |||||| |||||| ||||||| | |||||| | |||| || | Sbjct 3030 TTAGTTAA----ATTCGTTAACCAGCCGGCATCGGGCAGACATCACACTCAATACTTCGA 2975 Query 238 CTTT---CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| | || ||| ||||||||||||| | |||||||||| Sbjct 2974 TTTTTAATCTTTTAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 2931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260693399360