Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq198 140 8e-31
>seq198
Length=39678
Score = 140 bits (154), Expect = 8e-31
Identities = 203/284 (71%), Gaps = 17/284 (6%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||||| | ||||||||
Sbjct 3209 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 3150
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | ||||| |||||||||||||||||
Sbjct 3149 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 3090
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC------TTCGCG--- 177
|| | | |||| ||||||| || ||||||| ||| |||| | | || | |
Sbjct 3089 CCCTCA-CGTTAAGGCCGCCATTAACCGGGGGTTCCTTCAACACCAAACTTTTTGAGAAT 3031
Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237
|||| ||| || |||||| |||||| ||||||| | |||||| | |||| || |
Sbjct 3030 TTAGTTAA----ATTCGTTAACCAGCCGGCATCGGGCAGACATCACACTCAATACTTCGA 2975
Query 238 CTTT---CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
||| | || ||| ||||||||||||| | ||||||||||
Sbjct 2974 TTTTTAATCTTTTAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 2931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260693399360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |