Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2520 163 3e-38 seq2144 118 1e-24 seq3623 107 2e-21 seq3374 107 2e-21 seq2764 107 2e-21 seq2801 98.7 1e-18 seq2485 98.7 1e-18 seq1839 95.1 1e-17 seq2721 93.3 5e-17 seq2287 91.5 2e-16 seq2346 89.7 6e-16 seq3003 86.0 7e-15 seq2707 86.0 7e-15 seq1633 86.0 7e-15 seq2324 84.2 3e-14 seq2313 84.2 3e-14 seq2191 84.2 3e-14 seq1664 73.4 5e-11 >seq2520 Length=6748 Score = 163 bits (180), Expect = 3e-38 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1610 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 1551 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 1550 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGCTTCCCCGGCA 1491 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| | | || | ||| | || |||| | ||| Sbjct 1490 CACCCAGTGAAGGGCATGCGGTTCCGCAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 1431 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 1430 GTGAGGCGGACC 1419 >seq2144 Length=8075 Score = 118 bits (130), Expect = 1e-24 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | |||||||||||||||||||| || ||||| |||| Sbjct 2267 CTAGAAACTAATAAAATAGAACCACACGTCCTATTCTATTATTCTATACTAATATATTTA 2208 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | | |||||||||||| | || |||||||||||| |||| ||| Sbjct 2207 AGTATAGGCCTGCCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCTAGCA 2148 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| | || ||||||||| || || | ||| |||| | ||| | ||| Sbjct 2147 CACCTAGTAAAGGGCATACGGTTCTACAGAGGGAAAGGCCTGGCCAGACTAGTGCACGCA 2088 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2087 GTGAGGCGGACC 2076 >seq3623 Length=4087 Score = 107 bits (118), Expect = 2e-21 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| ||||||||| |||||||||||||||||||| || |||||||||| Sbjct 1936 CTAGAAACTAACAAAATAAAACTACACGTCCTATTCTATTATTCTATACTAATGTATTTA 1995 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | || |||||||||||| | || |||||||||||| |||| ||| Sbjct 1996 AGTATAGGCCTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCTAGCA 2055 Query 126 CACC 129 |||| Sbjct 2056 CACC 2059 >seq3374 Length=4591 Score = 107 bits (118), Expect = 2e-21 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| | |||||||||||||||||||| || ||||| |||| Sbjct 2279 CTAGAAACTAACAAAATAGAACCACACGTCCTATTCTATTATTCTATACTAATATATTTA 2338 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | | |||| ||||||| | || ||||||||||| |||| ||| Sbjct 2339 AGTATAGGCCTGCCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 2398 Query 126 CACCAATGAA--GGCATACGG 144 |||| | || ||||||||| Sbjct 2399 CACCTAGTAAAGGGCATACGG 2419 >seq2764 Length=6024 Score = 107 bits (118), Expect = 2e-21 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||| ||||||||||||| |||||||| |||| Sbjct 2152 CTAGAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTCTATGCTAATATATTTA 2093 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | || |||| ||||||| | || |||||||||||| |||| ||| Sbjct 2092 AGTATAGGCCTGCCTAGAGCACTTTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCTAGCA 2033 Query 126 CACCAATGAA--GGCATACGG 144 |||| | || ||||||||| Sbjct 2032 CACCTAGTAAAGGGCATACGG 2012 >seq2801 Length=5931 Score = 98.7 bits (108), Expect = 1e-18 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||| ||||||||||||| || ||||| |||| Sbjct 2332 CTAGAAACTAATAAAATAGAACTATACGTCTTATTCTATTATTCTATACTAATATATTTA 2273 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||||| || |||||||||||| | || ||||||||||| ||||| | | Sbjct 2272 AGTATAGGCCTGCTTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCCTTAGTA 2213 Query 126 CACCAATGAA--GGCATACGG 144 ||| | || ||||||||| Sbjct 2212 CACTTAGTAAAGGGCATACGG 2192 >seq2485 Length=6841 Score = 98.7 bits (108), Expect = 1e-18 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||| ||||||||||||| || |||||||||| Sbjct 4651 CTAGAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTCTATACTAATGTATTTA 4710 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | || |||| ||||||| | || ||||||||| || ||||| | | Sbjct 4711 AGTATAGGCCTGCCTAGAGCACTTTAATTTTTTTAAAGTAAAAGTCTTGCTTCCTTAGTA 4770 Query 126 CACCAATGAA--GGCATACGG 144 |||| | || ||||| ||| Sbjct 4771 CACCTAGTAAAGGGCATGCGG 4791 >seq1839 Length=9459 Score = 95.1 bits (104), Expect = 1e-17 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||| |||| |||||||| || ||||| |||| Sbjct 5402 CTAGAAACTAATAAAATAGAACTACACGTCTTATTTTATTATTCTATACTAATATATTTA 5461 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||| ||||||| | || ||||||||||| |||| ||| Sbjct 5462 AGCATAGGCCTGCCTAGAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 5521 Query 126 CACCAATGAA--GGCATACGG 144 ||| | || ||||||||| Sbjct 5522 CACTTAGTAAAGGGCATACGG 5542 >seq2721 Length=6152 Score = 93.3 bits (102), Expect = 5e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| || |||||||||| Sbjct 2313 CTAGAAACTAATAAAATAGAACTATACGTCCTATTCTATTATTCTATACTAATGTATTTA 2254 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | | |||| ||||||| | || |||||||||||| ||||| | | Sbjct 2253 AGTATAGGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTGCTTCCTTAGTA 2194 Query 126 CACC 129 |||| Sbjct 2193 CACC 2190 >seq2287 Length=7528 Score = 91.5 bits (100), Expect = 2e-16 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||| |||||||||||| |||||||| |||| Sbjct 2162 CTAGAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTTTATGCTAATATATTTA 2103 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | ||||||||| | | |||| ||||||| | || ||||||||||| ||| ||| Sbjct 2102 AGTATAAGCCTGCCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCTCTAGCA 2043 Query 126 CACCAATGAA--GGCATAC 142 |||| | || ||||||| Sbjct 2042 CACCTAGTAAAGGGCATAC 2024 >seq2346 Length=7286 Score = 89.7 bits (98), Expect = 6e-16 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || ||||||| | |||||||||||||||||||| || ||||| |||| Sbjct 2021 CTAAAAACTAATAAAATAGAACCACACGTCCTATTCTATTATTCTATACTAATATATTTA 1962 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | | |||| ||||||| | || ||||||||||| |||| ||| Sbjct 1961 AGTATAGGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 1902 Query 126 CACC 129 |||| Sbjct 1901 CACC 1898 >seq3003 Length=5407 Score = 86.0 bits (94), Expect = 7e-15 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| |||||| ||||||||||||| || ||||| |||| Sbjct 3388 CTAGAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTCTATACTAATATATTTA 3447 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | | |||| ||||||| | || ||||||||||| |||| ||| Sbjct 3448 AGTATAGGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 3507 Query 126 CACCAATGAA--GGCATAC 142 |||| | || ||||||| Sbjct 3508 CACCTAGTAAAGGGCATAC 3526 >seq2707 Length=6186 Score = 86.0 bits (94), Expect = 7e-15 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||| |||| ||||||| |||||||| |||| Sbjct 353 CTAGAAACTAATAAAATAGAACTATACGTCTTATTTTATTATTTTATGCTAATATATTTA 294 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||||| | || |||||||||||| | || ||||||||||| || || ||| Sbjct 293 AGTATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTACTTTCTTAGCA 234 Query 126 CACCAATGAA--GGCATAC 142 ||| | || ||||||| Sbjct 233 TACCTAGTAAAGGGCATAC 215 >seq1633 Length=10685 Score = 86.0 bits (94), Expect = 7e-15 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| || ||||| |||| Sbjct 566 CTAGAAACTAATAAAATAGAACTACACGTCCTATTCTATTATTTTATACTAATATATTTA 625 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | | |||| ||||||| | || ||||||||||| |||| ||| Sbjct 626 AGTATAGGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 685 Query 126 CACCAATGAA--GGCATAC 142 |||| | || ||||||| Sbjct 686 CACCTAGTAAAGGGCATAC 704 Score = 77.0 bits (84), Expect = 4e-12 Identities = 102/141 (72%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || ||||||| |||||| |||||||||||| || ||||| |||| Sbjct 8688 CTAAAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTTTATACTAATATATTTA 8747 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | | |||| ||||||| | || ||||||||||| ||| | ||| Sbjct 8748 AGTATAGGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCTTTAGCA 8807 Query 126 CACCAA--TGAAGGCATACGG 144 ||| | ||||||||||| Sbjct 8808 CACTTAGTAAAAGGCATACGG 8828 >seq2324 Length=7378 Score = 84.2 bits (92), Expect = 3e-14 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61 |||| ||||||| || ||||||| ||||| |||| |||||||| || |||||||| Sbjct 2140 GTCT-TAGAAACTAATAAAATAGAACTATACGTCTTATTTTATTATTCTATACTAATGTA 2082 Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC 121 || | || |||||| | | |||| ||||||| | || |||||||||||| |||| Sbjct 2081 TTTAAGTATAGGCCTGCCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTGCTTCCCT 2022 Query 122 CGCACACCAA--TGAAGGCATACGG 144 | ||||| | ||||||| ||| Sbjct 2021 AGTACACCTAGTAAAAGGCATGCGG 1997 >seq2313 Length=7424 Score = 84.2 bits (92), Expect = 3e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || ||||||| |||||||||||||||||||| || ||||| |||| Sbjct 2190 CTAAAAACTAATAAAATAGAACTACACGTCCTATTCTATTATTCTATACTAATATATTTA 2131 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | ||||||| | | | |||| ||||||| | || ||||||||||| |||| Sbjct 2130 AGTATAAGCCTACCTAAAGCACTTTAATTTTTTTAAAGTAAAAGTCCTACTTCC 2077 >seq2191 Length=7884 Score = 84.2 bits (92), Expect = 3e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| |||||||||| ||||||||||||||||||| || ||||| |||| Sbjct 5733 CTAAAAACTAACAAAATAGAACTACACGTCCTATTCTATTATTTTATACTAATATATTTA 5792 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||| | | | |||||||||||| | || ||||||||||| |||| Sbjct 5793 AGTATAGGCCTACCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCC 5846 >seq1664 Length=10504 Score = 73.4 bits (80), Expect = 5e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || ||||||| | || ||||||||||||| || ||||| |||| Sbjct 7639 CTAAAAACTAATAAAATAGAACTATATATCTTATTCTATTATTCTATACTAATATATTTA 7698 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTC 118 | || |||||| | | |||||||||||| | || |||||||||||| ||| Sbjct 7699 AGTATAGGCCTGCCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTC 7751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595151248470