Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq2520 219 7e-55
seq5985 98.7 2e-18
seq2324 96.9 6e-18
seq2144 86.0 1e-14
seq1633 84.2 4e-14
seq4274 80.6 4e-13
seq4062 80.6 4e-13
seq5328 75.2 2e-11
seq3243 75.2 2e-11
seq2707 75.2 2e-11
>seq2520
Length=6748
Score = 219 bits (242), Expect = 7e-55
Identities = 222/282 (79%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 6041 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6098
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6099 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6158
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | ||| | |||| |||| | || ||| |||||||||||||||| |
Sbjct 6159 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 6216
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | || | || |||||| | | | | | | ||| ||
Sbjct 6217 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 6270
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| || | || ||| ||||||||||||||||||
Sbjct 6271 TGTAATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 6312
>seq5985
Length=1411
Score = 98.7 bits (108), Expect = 2e-18
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||||||| || ||| ||||| |||| ||||| ||||||| |||
Sbjct 728 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTGCTGCGACGCTACTATCTGCTAGATA 787
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | ||||||
Sbjct 788 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 826
>seq2324
Length=7378
Score = 96.9 bits (106), Expect = 6e-18
Identities = 98/125 (78%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| |||||||| | | || ||| ||||| |||||| ||| ||| || |||||||
Sbjct 6568 GTACAAGAGGAACTACTTATTT-AGA-TAATTAGTTTTTATAGCTATCTAACTAGGCAGT 6625
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||| | ||||| ||||||| ||| || ||| ||||||||||||| |||||| || | |
Sbjct 6626 GCCGTAACGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACTA 6685
Query 121 GAACG 125
|||||
Sbjct 6686 GAACG 6690
>seq2144
Length=8075
Score = 86.0 bits (94), Expect = 1e-14
Identities = 119/164 (73%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| | ||||||| || ||| ||||| | ||||| |||| || |||
Sbjct 6722 ATAATTAGTTTTTACAGCTGTCTAACTAGGTAGTGCTATAACGCTACTATCTACTAGATA 6781
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146
|| ||| ||||||||||||| |||||| || | |||||| || | ||||| ||||
Sbjct 6782 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACGTAACAATAC-CTCCTATACAT 6840
Query 147 CGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190
||| |||| ||||||||| || | ||||||||||
Sbjct 6841 -ATAGATAGATATAAATAGGCTTTAGCTTAGCGTCTTAGCAGGC 6883
>seq1633
Length=10685
Score = 84.2 bits (92), Expect = 4e-14
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||||||| || ||| ||||| | ||||| ||||||| |||
Sbjct 4233 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTGCTATAACGCTACTATCTGCTAGATA 4174
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | ||||||
Sbjct 4173 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 4135
>seq4274
Length=3094
Score = 80.6 bits (88), Expect = 4e-13
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||| ||| || ||| ||||| | ||||| ||||||| |||
Sbjct 780 ATAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTATAACGCTACTATCTGCTAGATA 721
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | ||||||
Sbjct 720 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 682
>seq4062
Length=3418
Score = 80.6 bits (88), Expect = 4e-13
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||| ||| || ||| ||||| ||| ||||| |||| || |||
Sbjct 727 ATAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTACGACGCTACTATCTACTAGATA 668
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | | ||||
Sbjct 667 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAAAACG 629
>seq5328
Length=1936
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/99 (77%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||| ||| || | ||||||| | ||||| ||||||| |||
Sbjct 800 ATAATTAGTTTTTATAGCTATCTAACTAAGCAGTGCTATAACGCTACTATCTGCTAGATA 741
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | | ||||
Sbjct 740 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAAAACG 702
>seq3243
Length=4847
Score = 75.2 bits (82), Expect = 2e-11
Identities = 90/120 (75%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||||||| || | || ||| ||||| |||||| ||| ||| || ||| |||||
Sbjct 802 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTAT 745
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
| ||||| ||||||| ||| || ||| ||||||||||||| ||||| || | | ||||
Sbjct 744 AACGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATTTATACTAAAACG 685
>seq2707
Length=6186
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/99 (77%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| ||||||| || ||| ||| | | ||||| |||| || |||
Sbjct 4808 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTACTATAACGCTACTATCTACTAGATA 4867
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||| ||||||||||||| |||||| || | ||||||
Sbjct 4868 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 4906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819132901120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |