Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2520 219 7e-55 seq5985 98.7 2e-18 seq2324 96.9 6e-18 seq2144 86.0 1e-14 seq1633 84.2 4e-14 seq4274 80.6 4e-13 seq4062 80.6 4e-13 seq5328 75.2 2e-11 seq3243 75.2 2e-11 seq2707 75.2 2e-11 >seq2520 Length=6748 Score = 219 bits (242), Expect = 7e-55 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 6041 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6098 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6099 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6158 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 6159 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 6216 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 6217 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 6270 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| |||||||||||||||||| Sbjct 6271 TGTAATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 6312 >seq5985 Length=1411 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||||||| || ||| ||||| |||| ||||| ||||||| ||| Sbjct 728 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTGCTGCGACGCTACTATCTGCTAGATA 787 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | |||||| Sbjct 788 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 826 >seq2324 Length=7378 Score = 96.9 bits (106), Expect = 6e-18 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| | | || ||| ||||| |||||| ||| ||| || ||||||| Sbjct 6568 GTACAAGAGGAACTACTTATTT-AGA-TAATTAGTTTTTATAGCTATCTAACTAGGCAGT 6625 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||| | ||||| ||||||| ||| || ||| ||||||||||||| |||||| || | | Sbjct 6626 GCCGTAACGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACTA 6685 Query 121 GAACG 125 ||||| Sbjct 6686 GAACG 6690 >seq2144 Length=8075 Score = 86.0 bits (94), Expect = 1e-14 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| | ||||||| || ||| ||||| | ||||| |||| || ||| Sbjct 6722 ATAATTAGTTTTTACAGCTGTCTAACTAGGTAGTGCTATAACGCTACTATCTACTAGATA 6781 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 || ||| ||||||||||||| |||||| || | |||||| || | ||||| |||| Sbjct 6782 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACGTAACAATAC-CTCCTATACAT 6840 Query 147 CGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190 ||| |||| ||||||||| || | |||||||||| Sbjct 6841 -ATAGATAGATATAAATAGGCTTTAGCTTAGCGTCTTAGCAGGC 6883 >seq1633 Length=10685 Score = 84.2 bits (92), Expect = 4e-14 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||||||| || ||| ||||| | ||||| ||||||| ||| Sbjct 4233 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTGCTATAACGCTACTATCTGCTAGATA 4174 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | |||||| Sbjct 4173 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 4135 >seq4274 Length=3094 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||| ||| || ||| ||||| | ||||| ||||||| ||| Sbjct 780 ATAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTATAACGCTACTATCTGCTAGATA 721 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | |||||| Sbjct 720 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 682 >seq4062 Length=3418 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||| ||| || ||| ||||| ||| ||||| |||| || ||| Sbjct 727 ATAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTACGACGCTACTATCTACTAGATA 668 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | | |||| Sbjct 667 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAAAACG 629 >seq5328 Length=1936 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||| ||| || | ||||||| | ||||| ||||||| ||| Sbjct 800 ATAATTAGTTTTTATAGCTATCTAACTAAGCAGTGCTATAACGCTACTATCTGCTAGATA 741 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | | |||| Sbjct 740 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAAAACG 702 >seq3243 Length=4847 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| || | || ||| ||||| |||||| ||| ||| || ||| ||||| Sbjct 802 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTAT 745 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 | ||||| ||||||| ||| || ||| ||||||||||||| ||||| || | | |||| Sbjct 744 AACGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATTTATACTAAAACG 685 >seq2707 Length=6186 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||||||| || ||| ||| | | ||||| |||| || ||| Sbjct 4808 ATAATTAGTTTTTATAGCTGTCTAACTAGGTAGTACTATAACGCTACTATCTACTAGATA 4867 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||| ||||||||||||| |||||| || | |||||| Sbjct 4868 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACG 4906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819132901120