Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1012 244 8e-60 seq90 158 1e-33 >seq1012 Length=16087 Score = 244 bits (270), Expect = 8e-60 Identities = 554/825 (67%), Gaps = 10/825 (1%) Strand=Plus/Minus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| ||||| || || || ||||| || ||||| | ||| ||||| ||| || |||| Sbjct 1226 TGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGA 1167 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || || ||||| || || || || || || |||| |||| || || ||||||| Sbjct 1166 TGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGC 1107 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||| ||||||||||| | |||| | || |||||||||| || | ||| | | Sbjct 1106 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAA 1047 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238 |||| | ||| || | ||||| | || | | | |||| || | | ||||| Sbjct 1046 TGGCATACCAGAGCTTTTGGGCCTTGATGGT-CTTGCGACCCTTGCCCATCTGCTCGTAC 988 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGT 66296 | ||||| ||| ||||| | | |||| || |||| |||| ||||||| || Sbjct 987 TTCTCGTACAGGGTCTCGAAC--TCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGT 930 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 || ||||| || | ||| || || | || || || | ||| || ||||| || | Sbjct 929 TGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGA 870 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||| || ||| ||| || ||||| || || |||||| |||| || || ||||| | Sbjct 869 TCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAA 810 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 || | ||| || |||| ||| || ||||| || || ||||| || || || | || Sbjct 809 GATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGG 750 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 || ||| |||||||||||||||||||||||| || ||||||||||| | ||| | Sbjct 749 GGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGG 690 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | |||| |||||||| | || |||||||| | ||| || || || || || Sbjct 689 GAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGC 630 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCAC 66654 ||| ||||| |||||||| ||||||||| | || ||||| ||| || || | Sbjct 629 GGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGG 570 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 |||| | | || || || || ||||| |||| || | ||| |||| || || Sbjct 569 TGTC--GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAG 512 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || | | || ||| |||| |||||| || || | ||||| |||||| | | || Sbjct 511 CTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCT 452 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 ||||| ||||| || |||||||| |||| || ||||| Sbjct 451 CGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCC 407 Score = 127 bits (140), Expect = 2e-24 Identities = 331/495 (67%), Gaps = 16/495 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | ||||| |||| || | || ||||||||||| ||| Sbjct 2130 TCGACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 2071 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGC 65194 || || || ||| |||| || ||| ||||| | || | || |||| ||| || || Sbjct 2070 TTCAGACCGAGCTT-CCAACCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTTGGG- 2014 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || || | |||||| ||| |||||| | |||||| || |||||| Sbjct 2013 TCCTTCATGTGGATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCC 1954 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313 || | | || ||| || || ||||| |||||||||||||| || | ||||| Sbjct 1953 ATCTGCACGACGGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGTGCTTTG-ACCTC 1895 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | ||||| | |||| ||| | ||||| |||||||| || || ||| Sbjct 1894 GGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATAATACGGTTCTTCAT 1835 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGA 65429 | || ||||||| |||| ||||| || | | || ||||| | |||| | Sbjct 1834 AGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAGAGCCAAG----GGTTGACTA 1779 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | || |||||||| | || ||||| || |||||| || || ||| ||| || ||| Sbjct 1778 CCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGC 1719 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | ||| ||||||| | || || | || ||||| |||||||| ||||| | || | Sbjct 1718 ACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAG 1659 Query 65550 AGTTTCGCAATCCGT 65564 |||| || | |||| Sbjct 1658 AGTTGCGGACACCGT 1644 >seq90 Length=51520 Score = 158 bits (174), Expect = 1e-33 Identities = 218/301 (72%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | |||||| | |||||| Sbjct 5853 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATTTG 5794 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || ||| || | |||||| | | | | |||| | ||| | | ||||| Sbjct 5793 TCTAAGGACCTGCACGACTGGAACAACAAGATCAACGAG-GATGAGAAGTACTTCATCTC 5735 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| |||||||| ||||| |||||||||||||| || | || || Sbjct 5734 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 5675 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | ||||| || ||| | ||||| ||||| ||||| ||||||||||| | Sbjct 5674 CTTCA-GCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGATCATGA 5616 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| || Sbjct 5615 TGGAGAACATCCACTCCGAGACCTACTCGTTGCTCATTGACACCTACATCAAGGAGCCGG 5556 Query 61382 C 61382 | Sbjct 5555 C 5555 Score = 140 bits (154), Expect = 3e-28 Identities = 298/439 (68%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 ||||| || | ||||||||| | || |||||||| | |||||| | ||||| ||| | Sbjct 5380 GCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTC 5321 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || |||||||||||||||||| ||||||| | || || || |||||| Sbjct 5320 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAG 5261 Query 61618 GGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 || |||| || || | ||| | ||| || || || || ||| || || Sbjct 5260 GGTCTGCACACCGACTTCGCCTGCCTCTTG-TACTCTCAC-----CTCAAGAACCGCCCC 5207 Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734 || || | | || ||| || || || || || |||||||| || ||| Sbjct 5206 AGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGTTCCTG 5147 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 || || || | || | || |||||||||| | | || ||| |||||| ||| Sbjct 5146 ACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAGTACATT 5087 Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAA 61853 || || || |||||||| || ||||| | |||| | || || |||| || | Sbjct 5086 GAGTTCGTCGCCGACCGCCTCTTGGTTGCCCTTGGCAACGACAAGG-TCTACAAGTCTTC 5028 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| ||||| |||||||| | || || |||| || ||||| || || || ||||| Sbjct 5027 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCAACTTCTTTGAGAA 4968 Query 61914 ACGTGTAGGCGACTATCAA 61932 ||||| | |||||| ||| Sbjct 4967 GCGTGTTGCCGACTACCAA 4949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397527032481200