Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 244 8e-60
seq90 158 1e-33
>seq1012
Length=16087
Score = 244 bits (270), Expect = 8e-60
Identities = 554/825 (67%), Gaps = 10/825 (1%)
Strand=Plus/Minus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
|||| ||||| || || || ||||| || ||||| | ||| ||||| ||| || ||||
Sbjct 1226 TGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGA 1167
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
|| || ||||| || || || || || || |||| |||| || || |||||||
Sbjct 1166 TGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGC 1107
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||| ||||||||||| | |||| | || |||||||||| || | ||| | |
Sbjct 1106 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAA 1047
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238
|||| | ||| || | ||||| | || | | | |||| || | | |||||
Sbjct 1046 TGGCATACCAGAGCTTTTGGGCCTTGATGGT-CTTGCGACCCTTGCCCATCTGCTCGTAC 988
Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGT 66296
| ||||| ||| ||||| | | |||| || |||| |||| ||||||| ||
Sbjct 987 TTCTCGTACAGGGTCTCGAAC--TCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGT 930
Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356
|| ||||| || | ||| || || | || || || | ||| || ||||| || |
Sbjct 929 TGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGA 870
Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416
|||| || ||| ||| || ||||| || || |||||| |||| || || ||||| |
Sbjct 869 TCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAA 810
Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476
|| | ||| || |||| ||| || ||||| || || ||||| || || || | ||
Sbjct 809 GATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGG 750
Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536
|| ||| |||||||||||||||||||||||| || ||||||||||| | ||| |
Sbjct 749 GGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGG 690
Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596
| |||| |||||||| | || |||||||| | ||| || || || || ||
Sbjct 689 GAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGC 630
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCAC 66654
||| ||||| |||||||| ||||||||| | || ||||| ||| || || |
Sbjct 629 GGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGG 570
Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714
|||| | | || || || || ||||| |||| || | ||| |||| || ||
Sbjct 569 TGTC--GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAG 512
Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774
|| | | || ||| |||| |||||| || || | ||||| |||||| | | ||
Sbjct 511 CTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCT 452
Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819
||||| ||||| || |||||||| |||| || |||||
Sbjct 451 CGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCC 407
Score = 127 bits (140), Expect = 2e-24
Identities = 331/495 (67%), Gaps = 16/495 (3%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| ||||||||||| | ||||| |||| || | || ||||||||||| |||
Sbjct 2130 TCGACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 2071
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGC 65194
|| || || ||| |||| || ||| ||||| | || | || |||| ||| || ||
Sbjct 2070 TTCAGACCGAGCTT-CCAACCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTTGGG- 2014
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || || | |||||| ||| |||||| | |||||| || ||||||
Sbjct 2013 TCCTTCATGTGGATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCC 1954
Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313
|| | | || ||| || || ||||| |||||||||||||| || | |||||
Sbjct 1953 ATCTGCACGACGGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGTGCTTTG-ACCTC 1895
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
| ||||| | |||| ||| | ||||| |||||||| || || |||
Sbjct 1894 GGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATAATACGGTTCTTCAT 1835
Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGA 65429
| || ||||||| |||| ||||| || | | || ||||| | |||| |
Sbjct 1834 AGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAGAGCCAAG----GGTTGACTA 1779
Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489
| || |||||||| | || ||||| || |||||| || || ||| ||| || |||
Sbjct 1778 CCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGC 1719
Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549
| ||| ||||||| | || || | || ||||| |||||||| ||||| | || |
Sbjct 1718 ACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAG 1659
Query 65550 AGTTTCGCAATCCGT 65564
|||| || | ||||
Sbjct 1658 AGTTGCGGACACCGT 1644
>seq90
Length=51520
Score = 158 bits (174), Expect = 1e-33
Identities = 218/301 (72%), Gaps = 7/301 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||||||||| | |||||| | ||||||
Sbjct 5853 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATTTG 5794
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
|| || ||| || | |||||| | | | | |||| | ||| | | |||||
Sbjct 5793 TCTAAGGACCTGCACGACTGGAACAACAAGATCAACGAG-GATGAGAAGTACTTCATCTC 5735
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| |||||||| ||||| |||||||||||||| || | || ||
Sbjct 5734 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 5675
Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || | ||||| || ||| | ||||| ||||| ||||| ||||||||||| |
Sbjct 5674 CTTCA-GCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGATCATGA 5616
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 5615 TGGAGAACATCCACTCCGAGACCTACTCGTTGCTCATTGACACCTACATCAAGGAGCCGG 5556
Query 61382 C 61382
|
Sbjct 5555 C 5555
Score = 140 bits (154), Expect = 3e-28
Identities = 298/439 (68%), Gaps = 11/439 (3%)
Strand=Plus/Minus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
||||| || | ||||||||| | || |||||||| | |||||| | ||||| ||| |
Sbjct 5380 GCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTC 5321
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| ||||| || |||||||||||||||||| ||||||| | || || || ||||||
Sbjct 5320 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAG 5261
Query 61618 GGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674
|| |||| || || | ||| | ||| || || || || ||| || ||
Sbjct 5260 GGTCTGCACACCGACTTCGCCTGCCTCTTG-TACTCTCAC-----CTCAAGAACCGCCCC 5207
Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734
|| || | | || ||| || || || || || |||||||| || |||
Sbjct 5206 AGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGTTCCTG 5147
Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794
|| || || | || | || |||||||||| | | || ||| |||||| |||
Sbjct 5146 ACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAGTACATT 5087
Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAA 61853
|| || || |||||||| || ||||| | |||| | || || |||| || |
Sbjct 5086 GAGTTCGTCGCCGACCGCCTCTTGGTTGCCCTTGGCAACGACAAGG-TCTACAAGTCTTC 5028
Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
||||| ||||| |||||||| | || || |||| || ||||| || || || |||||
Sbjct 5027 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCAACTTCTTTGAGAA 4968
Query 61914 ACGTGTAGGCGACTATCAA 61932
||||| | |||||| |||
Sbjct 4967 GCGTGTTGCCGACTACCAA 4949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397527032481200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |