Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq10183 172 3e-41 seq9206 172 3e-41 seq8999 172 3e-41 seq7684 172 3e-41 seq3602 96.9 2e-18 >seq10183 Length=1347 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 206 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 148 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 147 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 91 >seq9206 Length=1734 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1016 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 958 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 957 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 901 >seq8999 Length=1813 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1527 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 1585 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1586 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1642 >seq7684 Length=2286 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 359 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 301 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 300 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 244 >seq3602 Length=13378 Score = 96.9 bits (106), Expect = 2e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 13141 ATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 13086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278373286650