Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9206 482 4e-134 seq3602 475 6e-132 seq2621 365 8e-99 seq7684 342 9e-92 seq8999 190 4e-46 seq3195 109 1e-21 >seq9206 Length=1734 Score = 482 bits (534), Expect = 4e-134 Identities = 296/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 587 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 646 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 647 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 706 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 707 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 766 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 767 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 826 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 827 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 885 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 886 ACGAAAGTTAGGGG 899 >seq3602 Length=13378 Score = 475 bits (526), Expect = 6e-132 Identities = 294/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 12772 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 12831 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 12832 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 12891 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 12892 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 12951 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 12952 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 13011 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||| |||||| |||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 13012 ATTKATTGAATACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 13070 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 13071 ACGAAAGTTAGGGG 13084 Score = 466 bits (516), Expect = 3e-129 Identities = 287/305 (94%), Gaps = 1/305 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 3042 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 3101 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 3102 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 3161 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3162 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3221 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3222 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3281 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 3282 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 3340 Query 305 ACGAA 309 ||||| Sbjct 3341 ACGAA 3345 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/83 (81%), Gaps = 4/83 (5%) Strand=Plus/Plus Query 238 TTCTTGGAT-TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 |||| | | |||| ||||||||| ||||||||| || || |||||||||||||||| Sbjct 3436 TTCTDGSAYCTTATWGAAGACTAASTACTGCGAARGCATTTGSCAAGGATGTTTTCATTT 3495 Query 297 ATCAGTGAACGAA--AGTTAGGG 317 ||||| ||||||| ||||||| Sbjct 3496 ATCAG-GAACGAASTRGTTAGGG 3517 >seq2621 Length=5193 Score = 365 bits (404), Expect = 8e-99 Identities = 224/237 (95%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 82 GAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGA 141 ||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||| Sbjct 4916 GAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGA 4975 Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4976 ATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACA 5035 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5036 GTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 5095 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 5096 TACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 5151 >seq7684 Length=2286 Score = 342 bits (378), Expect = 9e-92 Identities = 214/229 (93%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 90 TAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACG 149 ||| | | || | |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 15 TAGTGAGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACG 74 Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 75 TGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGG 134 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 194 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 195 AAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 242 >seq8999 Length=1813 Score = 190 bits (210), Expect = 4e-46 Identities = 125/141 (89%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||| |||| |||| ||| | ||||||||| |||||||||||||||||||||||| | Sbjct 1783 CCGMYCTAATAATTAWKAGGRACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAMA 1724 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 1723 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTA 1664 Query 298 TCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||||||| Sbjct 1663 TCAG-GAACGAAAGTTAGGGG 1644 >seq3195 Length=4674 Score = 109 bits (120), Expect = 1e-21 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 10 CGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAG 69 ||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 4600 CGGCCGGTCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGAAACAG 4659 Query 70 GACTTTTACTTTGAA 84 ||||||||||||||| Sbjct 4660 GACTTTTACTTTGAA 4674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915106329280