Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq9206 482 4e-134
seq3602 475 6e-132
seq2621 365 8e-99
seq7684 342 9e-92
seq8999 190 4e-46
seq3195 109 1e-21
>seq9206
Length=1734
Score = 482 bits (534), Expect = 4e-134
Identities = 296/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 587 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 646
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 647 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 706
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 707 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 766
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 767 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 826
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 827 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 885
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 886 ACGAAAGTTAGGGG 899
>seq3602
Length=13378
Score = 475 bits (526), Expect = 6e-132
Identities = 294/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 12772 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 12831
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 12832 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 12891
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 12892 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 12951
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 12952 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 13011
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||| |||||| |||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 13012 ATTKATTGAATACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 13070
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 13071 ACGAAAGTTAGGGG 13084
Score = 466 bits (516), Expect = 3e-129
Identities = 287/305 (94%), Gaps = 1/305 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 3042 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 3101
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 3102 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 3161
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3162 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3221
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3222 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3281
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 3282 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 3340
Query 305 ACGAA 309
|||||
Sbjct 3341 ACGAA 3345
Score = 82.4 bits (90), Expect = 1e-13
Identities = 67/83 (81%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 238 TTCTTGGAT-TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296
|||| | | |||| ||||||||| ||||||||| || || ||||||||||||||||
Sbjct 3436 TTCTDGSAYCTTATWGAAGACTAASTACTGCGAARGCATTTGSCAAGGATGTTTTCATTT 3495
Query 297 ATCAGTGAACGAA--AGTTAGGG 317
||||| ||||||| |||||||
Sbjct 3496 ATCAG-GAACGAASTRGTTAGGG 3517
>seq2621
Length=5193
Score = 365 bits (404), Expect = 8e-99
Identities = 224/237 (95%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 82 GAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGA 141
||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||
Sbjct 4916 GAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGA 4975
Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 4976 ATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACA 5035
Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5036 GTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 5095
Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 5096 TACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 5151
>seq7684
Length=2286
Score = 342 bits (378), Expect = 9e-92
Identities = 214/229 (93%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 90 TAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACG 149
||| | | || | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 15 TAGTGAGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACG 74
Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 75 TGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGG 134
Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 194
Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 195 AAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 242
>seq8999
Length=1813
Score = 190 bits (210), Expect = 4e-46
Identities = 125/141 (89%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||| |||| |||| ||| | ||||||||| |||||||||||||||||||||||| |
Sbjct 1783 CCGMYCTAATAATTAWKAGGRACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAMA 1724
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1723 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTA 1664
Query 298 TCAGTGAACGAAAGTTAGGGG 318
|||| ||||||||||||||||
Sbjct 1663 TCAG-GAACGAAAGTTAGGGG 1644
>seq3195
Length=4674
Score = 109 bits (120), Expect = 1e-21
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 10 CGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAG 69
||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 4600 CGGCCGGTCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGAAACAG 4659
Query 70 GACTTTTACTTTGAA 84
|||||||||||||||
Sbjct 4660 GACTTTTACTTTGAA 4674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915106329280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |