Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10183 358 1e-96 seq9206 358 1e-96 seq8999 358 1e-96 seq3602 358 1e-96 >seq10183 Length=1347 Score = 358 bits (396), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 590 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 531 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 530 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 472 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 471 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 413 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 412 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 353 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 352 AAAGAGCTCTCAATCTGTC 334 >seq9206 Length=1734 Score = 358 bits (396), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1400 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1341 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1340 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 1282 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 1281 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1223 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1222 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1163 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 1162 AAAGAGCTCTCAATCTGTC 1144 >seq8999 Length=1813 Score = 358 bits (396), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1143 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1202 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1203 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 1261 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 1262 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1320 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1321 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1380 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 1381 AAAGAGCTCTCAATCTGTC 1399 >seq3602 Length=13378 Score = 358 bits (396), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 4194 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 4135 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 4134 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 4076 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 4075 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 4017 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 4016 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 3957 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 3956 AAAGAGCTCTCAATCTGTC 3938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796720996035