Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq9206 269 3e-70 seq3602 269 3e-70 seq2621 237 2e-60 seq7684 219 4e-55 seq8999 80.6 3e-13 >seq9206 Length=1734 Score = 269 bits (298), Expect = 3e-70 Identities = 175/191 (92%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 644 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 703 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 704 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 762 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 763 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 822 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 823 TTGGATTTATT 833 >seq3602 Length=13378 Score = 269 bits (298), Expect = 3e-70 Identities = 175/191 (92%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 3099 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 3158 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 3159 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 3217 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 3218 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 3277 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 3278 TTGGATTTATT 3288 Score = 266 bits (294), Expect = 3e-69 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 12829 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 12888 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 12889 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 12947 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 12948 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 13007 Query 181 TTGGATTTATT 191 ||||||| ||| Sbjct 13008 TTGGATTKATT 13018 >seq2621 Length=5193 Score = 237 bits (262), Expect = 2e-60 Identities = 156/171 (91%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 21 GAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGA 80 ||||||||||||| | || | |||||||| ||||||||||||||| |||||||||||||| Sbjct 4916 GAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGA 4975 Query 81 ATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGAT 140 |||||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||| Sbjct 4976 ATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGAC 5034 Query 141 AGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 5035 AGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 5085 >seq7684 Length=2286 Score = 219 bits (242), Expect = 4e-55 Identities = 147/163 (90%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 29 TAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACG 88 ||| | | || | |||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 15 TAGTGAGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACG 74 Query 89 TGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGG 148 || ||||||||||||| |||||||||||||| |||||||||| |||| ||| |||||||| Sbjct 75 TGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACAGTCGGGG 133 Query 149 GTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 | ||||||||||||||||| |||||||||||||||||||||| Sbjct 134 GCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 176 >seq8999 Length=1813 Score = 80.6 bits (88), Expect = 3e-13 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 |||| || | | | | ||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 1777 TAATAATTAWKAGGRACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAMATTCTTG 1718 Query 184 GATTTATT 191 |||||||| Sbjct 1717 GATTTATT 1710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511949234400