Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6095 223 6e-56 seq3602 223 6e-56 seq3523 187 4e-45 >seq6095 Length=2915 Score = 223 bits (246), Expect = 6e-56 Identities = 221/278 (79%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1413 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1470 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1471 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1530 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 1531 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 1588 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| || || | | |||||| | | | | | | ||| |||| | Sbjct 1589 CTTAGCAGG-CGATTACTCCACTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTA 1646 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| ||||||||||||||||||| Sbjct 1647 ATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 1684 >seq3602 Length=13378 Score = 223 bits (246), Expect = 6e-56 Identities = 221/278 (79%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 9294 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 9351 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 9352 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 9411 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 9412 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 9469 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| || || | | |||||| | | | | | | ||| |||| | Sbjct 9470 CTTAGCAGG-CGATTACTCCACTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTA 9527 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| ||||||||||||||||||| Sbjct 9528 ATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 9565 >seq3523 Length=13413 Score = 187 bits (206), Expect = 4e-45 Identities = 198/257 (77%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 22 TCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCT 81 ||||| | ||| |||||||||||| | | || ||||||||||||| ||||||||||||| Sbjct 21 TCAGATWATTTGTTTTTTGCGGCTGYCCGCCCGGGCAGTGCCGCGACGCTACCATCTGCT 80 Query 82 GGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTG 141 |||| ||||||||||||||||||||||||||||||||||||||| | ||| | |||| | Sbjct 81 GGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGCGACGATAC-CTCCCG 139 Query 142 CACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGC 201 ||| | || ||| |||||||||||||||| | ||||||||| || || Sbjct 140 CACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGTCTTAGCAGG-CGATTACTCCA 197 Query 202 GTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATA 261 | | |||||| | | | | | | ||| |||| ||||||| || | || ||| || Sbjct 198 CTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTAATTTCAGCACGAGCGGGGGTA 256 Query 262 AATCCTTTGCAGACGAC 278 ||||||||||||||||| Sbjct 257 AATCCTTTGCAGACGAC 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819118775040