Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2519 298 4e-76 seq3410 96.9 3e-15 >seq2519 Length=5298 Score = 298 bits (330), Expect = 4e-76 Identities = 557/812 (69%), Gaps = 6/812 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| ||||||| || || || || |||||||||||||| | ||||||||||||| Sbjct 2733 ACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAG 2674 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | || || |||||||| ||| || ||| ||||| || | |||| || || Sbjct 2673 TACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTG 2614 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||||| ||| ||||||||||| | |||| | || |||| ||||| |||| | Sbjct 2613 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCC 2554 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231 |||| ||| || | ||| || | ||||||| || | | | |||| || | | Sbjct 2553 TCAAGGATAGCATACCAGAGCTTCTGAGCCTTCATGGT-CTTGCGTCCCTTGCCCATCTG 2495 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 |||||| | || || | | || || || || | |||| || | || || Sbjct 2494 TTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCA 2435 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | || ||||| || | ||| || || | || || || | ||| || ||||| Sbjct 2434 CTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATC 2375 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||||||||| ||||| || || || || |||||| | |||||||| || Sbjct 2374 GGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTT 2315 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 ||||| || | ||| || |||| |||||| ||||| || || ||||||||||| || | Sbjct 2314 GCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGC 2255 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || ||| ||| ||||| ||||| ||||||||||| |||||||||||||| | Sbjct 2254 ACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAG 2195 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCG 66591 ||| || || | || || || | |||||||||||| | ||| ||| || || || Sbjct 2194 CATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACG 2135 Query 66592 TATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-G 66649 || |||||||||||| || |||||||||||| |||| ||||| || ||| || Sbjct 2134 AATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTT 2075 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | |||| | || || || ||||| || |||| ||| | |||| |||| || Sbjct 2074 GAGGGTGTC--ATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAG 2017 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 || |||| | || || | || |||||| ||||| | |||||||| ||| | Sbjct 2016 GATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAAC 1957 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 | || ||||| | ||||| || |||||||| Sbjct 1956 TTGCTGGACATCAAGTTGTAGGTTTCGATGAC 1925 Score = 138 bits (152), Expect = 9e-28 Identities = 332/494 (67%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || | |||||| |||| || | |||||||||||||| ||| Sbjct 3630 TCAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTC 3571 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 ||||| || ||| ||| | ||| ||||| | || | || |||| | | | || | Sbjct 3570 TTGAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTGGGAT 3513 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || ||||| | |||||| |||||| ||| | ||||||||| ||||||| Sbjct 3512 CCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCA 3453 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || || | ||| || || ||||| |||||||||||||| | | | ||||| Sbjct 3452 TCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGA-GCCTTGACCTCT 3394 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 | || || | ||||| ||| | |||||| || || || || || ||| Sbjct 3393 GTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATG 3334 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAA----CCAAGTGACGATTGATGAC 65430 | || ||||| | |||| |||| ||| | | || ||||| | |||| ||| Sbjct 3333 GCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGG----TTGACGAC 3278 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||||||||| | || ||||| || |||||||| || ||| ||| ||||| | Sbjct 3277 CTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACA 3218 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| | || || | ||| ||||| |||||||| ||||| | || || Sbjct 3217 CTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGA 3158 Query 65551 GTTTCGCAATCCGT 65564 ||| || | |||| Sbjct 3157 GTTGCGGACACCGT 3144 >seq3410 Length=4507 Score = 96.9 bits (106), Expect = 3e-15 Identities = 202/297 (68%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || || ||||| | ||||| | ||| || Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || | |||||||| | | | | |||| | ||| | | ||||| Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAACGAG-GATGAGAAGTACTTCATCTC 2506 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| || || || |||||||| ||||| | | || || Sbjct 2505 GCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAGCG 2446 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | || || || || | ||||| | || || |||||||||||||| | Sbjct 2445 CTTCA-GCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATGA 2387 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| | ||||| |||| ||| | |||||||| || ||||||| ||||| Sbjct 2386 TGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGC 2330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518407740400