Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 298 4e-76
seq3410 96.9 3e-15
>seq2519
Length=5298
Score = 298 bits (330), Expect = 4e-76
Identities = 557/812 (69%), Gaps = 6/812 (1%)
Strand=Plus/Minus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
||||| ||||||| || || || || |||||||||||||| | |||||||||||||
Sbjct 2733 ACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAG 2674
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||| | || || |||||||| ||| || ||| ||||| || | |||| || ||
Sbjct 2673 TACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTG 2614
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
|||||||| ||| ||||||||||| | |||| | || |||| ||||| |||| |
Sbjct 2613 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCC 2554
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231
|||| ||| || | ||| || | ||||||| || | | | |||| || | |
Sbjct 2553 TCAAGGATAGCATACCAGAGCTTCTGAGCCTTCATGGT-CTTGCGTCCCTTGCCCATCTG 2495
Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291
|||||| | || || | | || || || || | |||| || | || ||
Sbjct 2494 TTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCA 2435
Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351
|| | || ||||| || | ||| || || | || || || | ||| || |||||
Sbjct 2434 CTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATC 2375
Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411
|| ||||||||||| ||||| || || || || |||||| | |||||||| ||
Sbjct 2374 GGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTT 2315
Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471
||||| || | ||| || |||| |||||| ||||| || || ||||||||||| || |
Sbjct 2314 GCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGC 2255
Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531
|| ||| ||| ||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 2254 ACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAG 2195
Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCG 66591
||| || || | || || || | |||||||||||| | ||| ||| || || ||
Sbjct 2194 CATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACG 2135
Query 66592 TATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-G 66649
|| |||||||||||| || |||||||||||| |||| ||||| || ||| ||
Sbjct 2134 AATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTT 2075
Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709
| |||| | || || || ||||| || |||| ||| | |||| |||| ||
Sbjct 2074 GAGGGTGTC--ATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAG 2017
Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769
|| |||| | || || | || |||||| ||||| | |||||||| ||| |
Sbjct 2016 GATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAAC 1957
Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGAC 66801
| || ||||| | ||||| || ||||||||
Sbjct 1956 TTGCTGGACATCAAGTTGTAGGTTTCGATGAC 1925
Score = 138 bits (152), Expect = 9e-28
Identities = 332/494 (67%), Gaps = 14/494 (3%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || |||||||| || | |||||| |||| || | |||||||||||||| |||
Sbjct 3630 TCAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTC 3571
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195
||||| || ||| ||| | ||| ||||| | || | || |||| | | | || |
Sbjct 3570 TTGAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTGGGAT 3513
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || ||||| | |||||| |||||| ||| | ||||||||| |||||||
Sbjct 3512 CCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGCAGCCA 3453
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | || || | ||| || || ||||| |||||||||||||| | | | |||||
Sbjct 3452 TCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGA-GCCTTGACCTCT 3394
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
| || || | ||||| ||| | |||||| || || || || || |||
Sbjct 3393 GTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATG 3334
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAA----CCAAGTGACGATTGATGAC 65430
| || ||||| | |||| |||| ||| | | || ||||| | |||| |||
Sbjct 3333 GCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGG----TTGACGAC 3278
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
||||||||||| | || ||||| || |||||||| || ||| ||| ||||| |
Sbjct 3277 CTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACA 3218
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
|| ||||||| | || || | ||| ||||| |||||||| ||||| | || ||
Sbjct 3217 CTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGA 3158
Query 65551 GTTTCGCAATCCGT 65564
||| || | ||||
Sbjct 3157 GTTGCGGACACCGT 3144
>seq3410
Length=4507
Score = 96.9 bits (106), Expect = 3e-15
Identities = 202/297 (68%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || || || ||||| | ||||| | ||| ||
Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
|| || || | |||||||| | | | | |||| | ||| | | |||||
Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAACGAG-GATGAGAAGTACTTCATCTC 2506
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| ||||| || || || |||||||| ||||| | | || ||
Sbjct 2505 GCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAGCG 2446
Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || | || || || || | ||||| | || || |||||||||||||| |
Sbjct 2445 CTTCA-GCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATGA 2387
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| | ||||| |||| ||| | |||||||| || ||||||| |||||
Sbjct 2386 TGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGC 2330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397518407740400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |