Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2550 792 0.0
seq139 190 7e-46
>seq2550
Length=6211
Score = 792 bits (878), Expect = 0.0
Identities = 499/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 5652 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 5593
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 5592 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 5533
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 5532 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 5475
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 5474 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 5418
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 5417 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 5358
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5357 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 5298
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 5297 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 5238
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 5237 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 5178
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5177 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 5121
>seq139
Length=100673
Score = 190 bits (210), Expect = 7e-46
Identities = 198/257 (77%), Gaps = 6/257 (2%)
Strand=Plus/Plus
Query 165 AAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT 224
||| ||||| |||||||| | | ||||| ||| | || ||| |||||||||||
Sbjct 60934 AAGCCCAGTCCCGCTTCAATAAACAAGTAGAAACCAG-TAGTAGTAATGGTATTTCACCG 60992
Query 225 GCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284
||||||| ||||| | ||| ||||||| | ||| ||||| | | || |||
Sbjct 60993 ACGCCGAA---GCTCCAAGCTATCTGACACCTCCTATGTCTTTTCATAGTTTTAGAATAG 61049
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344
||||||||| ||||| || ||| ||||| |||||| |||||||||||||| |||||||
Sbjct 61050 AGTCAAGCT--ACAGGATCATCTCCCCCCGTTGATTCTGCCAAGCCCGTTCCGTTGGCTG 61107
Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404
||| |||||| ||||||||| |||| || | ||||| ||||| |||||| ||||||| ||
Sbjct 61108 TGGCTTCGCTGGATAGTAGAGAGGGGCAATAGGAATTTCGTTGATCCATGCATGCGCTTC 61167
Query 405 ACTAATTAGATGACGAG 421
| ||||||||||| |||
Sbjct 61168 ATTAATTAGATGAAGAG 61184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635152644608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |