Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1484 360 2e-94 seq2328 127 2e-24 >seq1484 Length=366709 Score = 360 bits (398), Expect = 2e-94 Identities = 1145/1747 (66%), Gaps = 64/1747 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | |||||| |||| || | || ||||||||||| ||| Sbjct 273020 TCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 273079 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 || || || ||| ||| | ||| ||||| | || | ||||||| | |||| | Sbjct 273080 TTCAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCATGGTCGGGT 273137 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | |||||| ||| || ||| | |||||| || ||||||| Sbjct 273138 CCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGCCA 273197 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || ||| || || ||||| || |||||||||||| | | | |||||| Sbjct 273198 TCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGG-GCCTTGACCTCA 273256 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 | || || | |||| ||||| ||||| ||||| ||||| || ||| Sbjct 273257 GTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 273316 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430 | || ||||||||||||| |||| ||| | | || ||||| | |||| ||| Sbjct 273317 GCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGG----TTGACGAC 273372 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | || ||||| || ||||||||||| ||| ||| |||||| | Sbjct 273373 CTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCA 273432 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| | || || | || ||||| |||||||| ||||| | | || Sbjct 273433 CTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGA 273492 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGT 65608 ||| || | |||| | | || | | ||| ||||||||| ||| | || | Sbjct 273493 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCG- 273551 Query 65609 TTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | | | ||||| | ||||| || | || ||| | || | | | || || Sbjct 273552 --AGGGCTTGACATTC------CACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGA 273603 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724 ||| | | | | ||| |||||||||||||| || || || | |||| ||| Sbjct 273604 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAG 273660 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCT 65783 || || || |||||||| || || | || || || || || |||||| || Sbjct 273661 GGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 273719 Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 || | ||||| | || ||||| | | || || ||||| || || || | ||| | Sbjct 273720 CGAAGGGCATGCGCAGAGCCAGGA---AGGCATCAGCAAGACCCTGGACACCGAGACCAA 273776 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || ||||||| ||| | ||||| | |||||||||| |||| |||| Sbjct 273777 TGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGA 273836 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959 | || | |||| ||||| || || || || ||| | || | ||| || Sbjct 273837 TGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG-GAAGTC- 273894 Query 65960 AAATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017 || | | | ||| | ||| | ||||| |||| | ||| || || | Sbjct 273895 ----GTAGACGCCC-TCGTTGTAGT--------CAACAAAGGTGGGCAAGGCGAGCGAGG 273941 Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077 | ||||||||||| || | ||| ||||| ||| ||||||| || || ||||| || | Sbjct 273942 CCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGT 274001 Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137 | || ||| |||||||| | |||| || || |||||||| ||| |||||||||| Sbjct 274002 TGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 274061 Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197 | | |||| | || |||| ||||| |||| ||| | |||||| | ||| || Sbjct 274062 AGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 274121 Query 66198 GTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256 | ||||||| || | | | |||| || | | ||||| | ||||| | | ||| Sbjct 274122 GGGCCTTCATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCG 274180 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316 || || || | |||| ||| | || |||| || || ||||| || | ||| Sbjct 274181 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAG 274240 Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 || || | || ||||| | ||| || || || || |||||||| ||| ||| || Sbjct 274241 TCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGG 274300 Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436 || || || || |||||| ||||||| || ||||||| || | ||| || |||| Sbjct 274301 TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACA 274360 Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496 ||||| ||||| || || |||||||||||||| | ||| |||||| |||||| ||| Sbjct 274361 TCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGG 274420 Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556 |||||||||||||| |||||||||||||| | ||| || |||| ||||| || | Sbjct 274421 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTA 274480 Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616 || || |||||| | || ||| || || || || ||||| || |||||||| Sbjct 274481 CCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATG 274540 Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAA 66674 ||||||||| |||| ||||| || ||| || | |||| | | || || |||| Sbjct 274541 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC--GTAGATACCCTCAA 274598 Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGG 66734 | ||||| |||| ||| | |||| |||| || || |||| | || || | | Sbjct 274599 TAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAG 274658 Query 66735 CCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794 | |||||| ||||| | |||||| || ||| | | || ||||| ||||| || | Sbjct 274659 CGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTT 274718 Query 66795 CGATGAC 66801 ||||||| Sbjct 274719 CGATGAC 274725 >seq2328 Length=411296 Score = 127 bits (140), Expect = 2e-24 Identities = 286/424 (67%), Gaps = 7/424 (2%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 ||||||||| | || ||||| || | || ||| | ||||| ||| | ||||| ||||| Sbjct 57275 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGT 57216 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 |||||||| |||||||||||| ||| ||| | || || || || ||||| | || Sbjct 57215 CTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACC 57156 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 || ||||| | || || || || | || ||| || || || || | Sbjct 57155 GACTTTGC---CTGCCTCCTC-TACTCTCACCTCAAGAACCGCCCCAGCAAGCAGGTCAT 57100 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | || ||| || || || || | ||||| ||||| || ||||| || ||| |||| Sbjct 57099 TGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC 57040 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | || |||||||||| | || ||| |||||| ||||| || || || || Sbjct 57039 TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGA 56980 Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 |||||| ||||| | | |||| |||| || |||| || | || || || || | Sbjct 56979 CCGTCTCTTGGTTGCTCTTGGCAATGACAAGG-TCTACAAGTCTTCCAATCCGTTCGACT 56921 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 | ||||| | || || |||| |||||||| || || || ||||| ||||| | ||||| Sbjct 56920 TTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACT 56861 Query 61928 ATCA 61931 | || Sbjct 56860 ACCA 56857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553967837440