Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 360 2e-94
seq2328 127 2e-24
>seq1484
Length=366709
Score = 360 bits (398), Expect = 2e-94
Identities = 1145/1747 (66%), Gaps = 64/1747 (4%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | |||||| |||| || | || ||||||||||| |||
Sbjct 273020 TCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 273079
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|| || || ||| ||| | ||| ||||| | || | ||||||| | |||| |
Sbjct 273080 TTCAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCATGGTCGGGT 273137
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || || | |||||| ||| || ||| | |||||| || |||||||
Sbjct 273138 CCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGCCA 273197
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | | || ||| || || ||||| || |||||||||||| | | | ||||||
Sbjct 273198 TCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGG-GCCTTGACCTCA 273256
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
| || || | |||| ||||| ||||| ||||| ||||| || |||
Sbjct 273257 GTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 273316
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430
| || ||||||||||||| |||| ||| | | || ||||| | |||| |||
Sbjct 273317 GCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGG----TTGACGAC 273372
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
|||||||| || | || ||||| || ||||||||||| ||| ||| |||||| |
Sbjct 273373 CTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCA 273432
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
|| ||||||| | || || | || ||||| |||||||| ||||| | | ||
Sbjct 273433 CTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGA 273492
Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGT 65608
||| || | |||| | | || | | ||| ||||||||| ||| | || |
Sbjct 273493 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCG- 273551
Query 65609 TTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667
| | | ||||| | ||||| || | || ||| | || | | | || ||
Sbjct 273552 --AGGGCTTGACATTC------CACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGA 273603
Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724
||| | | | | ||| |||||||||||||| || || || | |||| |||
Sbjct 273604 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAG 273660
Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCT 65783
|| || || |||||||| || || | || || || || || |||||| ||
Sbjct 273661 GGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 273719
Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840
|| | ||||| | || ||||| | | || || ||||| || || || | ||| |
Sbjct 273720 CGAAGGGCATGCGCAGAGCCAGGA---AGGCATCAGCAAGACCCTGGACACCGAGACCAA 273776
Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900
|||| || ||||||| ||| | ||||| | |||||||||| |||| ||||
Sbjct 273777 TGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGA 273836
Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959
| || | |||| ||||| || || || || ||| | || | ||| ||
Sbjct 273837 TGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG-GAAGTC- 273894
Query 65960 AAATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017
|| | | | ||| | ||| | ||||| |||| | ||| || || |
Sbjct 273895 ----GTAGACGCCC-TCGTTGTAGT--------CAACAAAGGTGGGCAAGGCGAGCGAGG 273941
Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077
| ||||||||||| || | ||| ||||| ||| ||||||| || || ||||| || |
Sbjct 273942 CCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGT 274001
Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137
| || ||| |||||||| | |||| || || |||||||| ||| ||||||||||
Sbjct 274002 TGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 274061
Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197
| | |||| | || |||| ||||| |||| ||| | |||||| | ||| ||
Sbjct 274062 AGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 274121
Query 66198 GTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256
| ||||||| || | | | |||| || | | ||||| | ||||| | | |||
Sbjct 274122 GGGCCTTCATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCG 274180
Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316
|| || || | |||| ||| | || |||| || || ||||| || | |||
Sbjct 274181 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAG 274240
Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376
|| || | || ||||| | ||| || || || || |||||||| ||| ||| ||
Sbjct 274241 TCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGG 274300
Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436
|| || || || |||||| ||||||| || ||||||| || | ||| || ||||
Sbjct 274301 TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACA 274360
Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496
||||| ||||| || || |||||||||||||| | ||| |||||| |||||| |||
Sbjct 274361 TCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGG 274420
Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556
|||||||||||||| |||||||||||||| | ||| || |||| ||||| || |
Sbjct 274421 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTA 274480
Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616
|| || |||||| | || ||| || || || || ||||| || ||||||||
Sbjct 274481 CCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATG 274540
Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAA 66674
||||||||| |||| ||||| || ||| || | |||| | | || || ||||
Sbjct 274541 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC--GTAGATACCCTCAA 274598
Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGG 66734
| ||||| |||| ||| | |||| |||| || || |||| | || || | |
Sbjct 274599 TAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAG 274658
Query 66735 CCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794
| |||||| ||||| | |||||| || ||| | | || ||||| ||||| || |
Sbjct 274659 CGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTT 274718
Query 66795 CGATGAC 66801
|||||||
Sbjct 274719 CGATGAC 274725
>seq2328
Length=411296
Score = 127 bits (140), Expect = 2e-24
Identities = 286/424 (67%), Gaps = 7/424 (2%)
Strand=Plus/Minus
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
||||||||| | || ||||| || | || ||| | ||||| ||| | ||||| |||||
Sbjct 57275 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGT 57216
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629
|||||||| |||||||||||| ||| ||| | || || || || ||||| | ||
Sbjct 57215 CTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACC 57156
Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688
|| ||||| | || || || || | || ||| || || || || |
Sbjct 57155 GACTTTGC---CTGCCTCCTC-TACTCTCACCTCAAGAACCGCCCCAGCAAGCAGGTCAT 57100
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748
| || ||| || || || || | ||||| ||||| || ||||| || ||| ||||
Sbjct 57099 TGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC 57040
Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808
| | || |||||||||| | || ||| |||||| ||||| || || || ||
Sbjct 57039 TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGA 56980
Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867
|||||| ||||| | | |||| |||| || |||| || | || || || || |
Sbjct 56979 CCGTCTCTTGGTTGCTCTTGGCAATGACAAGG-TCTACAAGTCTTCCAATCCGTTCGACT 56921
Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927
| ||||| | || || |||| |||||||| || || || ||||| ||||| | |||||
Sbjct 56920 TTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACT 56861
Query 61928 ATCA 61931
| ||
Sbjct 56860 ACCA 56857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397553967837440
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