Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq950 401 3e-109 seq896 300 7e-79 >seq950 Length=1450 Score = 401 bits (444), Expect = 3e-109 Identities = 320/382 (84%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 302 GGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361 |||| || || | |||||||| ||||||||||| | | ||| | || | || || Sbjct 6 GGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGG-CT 64 Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 ||||| ||||||||| | ||||||||||||||||||| | |||| ||||||||| |||| Sbjct 65 GAGGTACGCGCTCCG-CAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACA 123 Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481 |||||||||||||| | | | | ||||||||||||||||| |||||| | |||||||||| Sbjct 124 CGGACCAAGGAGTCAACCTTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGA 183 Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 ||||||||| ||||| || | || ||| ||||||||||||||||||| ||||| Sbjct 184 AAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGGA 239 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 |||||||||||||||||||| | | |||||||||||| |||||||||||| || |||| Sbjct 240 TGGATTTGAGTAAGAGCATATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAG 299 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 300 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCG 359 Query 662 TCAAATTTGGGTATAGGGGCGA 683 |||||| || | || ||||||| Sbjct 360 TCAAATATGCGCATGGGGGCGA 381 >seq896 Length=816 Score = 300 bits (332), Expect = 7e-79 Identities = 183/194 (94%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 198 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 139 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 79 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 78 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 19 Query 203 GCAACCAGACTTGC 216 | ||||||||||| Sbjct 18 GTGACCAGACTTGC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079977777800