Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq950 401 3e-109
seq896 300 7e-79
>seq950
Length=1450
Score = 401 bits (444), Expect = 3e-109
Identities = 320/382 (84%), Gaps = 6/382 (2%)
Strand=Plus/Plus
Query 302 GGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361
|||| || || | |||||||| ||||||||||| | | ||| | || | || ||
Sbjct 6 GGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGG-CT 64
Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421
||||| ||||||||| | ||||||||||||||||||| | |||| ||||||||| ||||
Sbjct 65 GAGGTACGCGCTCCG-CAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACA 123
Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481
|||||||||||||| | | | | ||||||||||||||||| |||||| | ||||||||||
Sbjct 124 CGGACCAAGGAGTCAACCTTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGA 183
Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541
||||||||| ||||| || | || ||| ||||||||||||||||||| |||||
Sbjct 184 AAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGGA 239
Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601
|||||||||||||||||||| | | |||||||||||| |||||||||||| || ||||
Sbjct 240 TGGATTTGAGTAAGAGCATATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAG 299
Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCG 359
Query 662 TCAAATTTGGGTATAGGGGCGA 683
|||||| || | || |||||||
Sbjct 360 TCAAATATGCGCATGGGGGCGA 381
>seq896
Length=816
Score = 300 bits (332), Expect = 7e-79
Identities = 183/194 (94%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct 198 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 139
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 79
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 78 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 19
Query 203 GCAACCAGACTTGC 216
| |||||||||||
Sbjct 18 GTGACCAGACTTGC 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079977777800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |