Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1004 134 3e-29 >seq1004 Length=3999 Score = 134 bits (148), Expect = 3e-29 Identities = 201/285 (71%), Gaps = 18/285 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 408 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 349 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 348 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 289 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC----------TTCGC 176 || | | |||| ||||||| || ||||||| ||| |||| | | || Sbjct 288 CCCTCA-CGTTAAGGCCGCCATTAACCGGGGGTTCCTTCAACACCAAATTTTTTGATCAA 230 Query 177 GTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236 |||| ||| || |||||| |||||| ||||||| | |||||| | |||| || Sbjct 229 TTTAGTTAA----ATTCGTTAACCAGCCGGCATCGGGCAGACATCACACTCAATACTTCG 174 Query 237 ACTTT---CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | ||| | || ||| ||||||||||||| | |||||||||| Sbjct 173 ATTTTTAATCTTTTAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260786938112