Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq431 360 2e-94 seq444 127 2e-24 >seq431 Length=114165 Score = 360 bits (398), Expect = 2e-94 Identities = 1145/1747 (66%), Gaps = 64/1747 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | |||||| |||| || | || ||||||||||| ||| Sbjct 110917 TCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 110858 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 || || || ||| ||| | ||| ||||| | || | ||||||| | |||| | Sbjct 110857 TTCAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCATGGTCGGGT 110800 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | |||||| ||| || ||| | |||||| || ||||||| Sbjct 110799 CCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGCCA 110740 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || ||| || || ||||| || |||||||||||| | | | |||||| Sbjct 110739 TCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGG-GCCTTGACCTCA 110681 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 | || || | |||| ||||| ||||| ||||| ||||| || ||| Sbjct 110680 GTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 110621 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430 | || ||||||||||||| |||| ||| | | || ||||| | |||| ||| Sbjct 110620 GCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGG----TTGACGAC 110565 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | || ||||| || ||||||||||| ||| ||| |||||| | Sbjct 110564 CTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCA 110505 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| | || || | || ||||| |||||||| ||||| | | || Sbjct 110504 CTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGA 110445 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGT 65608 ||| || | |||| | | || | | ||| ||||||||| ||| | || | Sbjct 110444 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCG- 110386 Query 65609 TTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | | | ||||| | ||||| || | || ||| | || | | | || || Sbjct 110385 --AGGGCTTGACATTC------CACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGA 110334 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724 ||| | | | | ||| |||||||||||||| || || || | |||| ||| Sbjct 110333 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAG 110277 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCT 65783 || || || |||||||| || || | || || || || || |||||| || Sbjct 110276 GGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 110218 Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 || | ||||| | || ||||| | | || || ||||| || || || | ||| | Sbjct 110217 CGAAGGGCATGCGCAGAGCCAGGA---AGGCATCAGCAAGACCCTGGACACCGAGACCAA 110161 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || ||||||| ||| | ||||| | |||||||||| |||| |||| Sbjct 110160 TGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGA 110101 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959 | || | |||| ||||| || || || || ||| | || | ||| || Sbjct 110100 TGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG-GAAGTC- 110043 Query 65960 AAATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017 || | | | ||| | ||| | ||||| |||| | ||| || || | Sbjct 110042 ----GTAGACGCCC-TCGTTGTAGT--------CAACAAAGGTGGGCAAGGCGAGCGAGG 109996 Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077 | ||||||||||| || | ||| ||||| ||| ||||||| || || ||||| || | Sbjct 109995 CCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGT 109936 Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137 | || ||| |||||||| | |||| || || |||||||| ||| |||||||||| Sbjct 109935 TGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 109876 Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197 | | |||| | || |||| ||||| |||| ||| | |||||| | ||| || Sbjct 109875 AGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 109816 Query 66198 GTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256 | ||||||| || | | | |||| || | | ||||| | ||||| | | ||| Sbjct 109815 GGGCCTTCATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCG 109757 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316 || || || | |||| ||| | || |||| || || ||||| || | ||| Sbjct 109756 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAG 109697 Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 || || | || ||||| | ||| || || || || |||||||| ||| ||| || Sbjct 109696 TCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGG 109637 Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436 || || || || |||||| ||||||| || ||||||| || | ||| || |||| Sbjct 109636 TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACA 109577 Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496 ||||| ||||| || || |||||||||||||| | ||| |||||| |||||| ||| Sbjct 109576 TCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGG 109517 Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556 |||||||||||||| |||||||||||||| | ||| || |||| ||||| || | Sbjct 109516 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTA 109457 Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616 || || |||||| | || ||| || || || || ||||| || |||||||| Sbjct 109456 CCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATG 109397 Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAA 66674 ||||||||| |||| ||||| || ||| || | |||| | | || || |||| Sbjct 109396 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC--GTAGATACCCTCAA 109339 Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGG 66734 | ||||| |||| ||| | |||| |||| || || |||| | || || | | Sbjct 109338 TAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAG 109279 Query 66735 CCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794 | |||||| ||||| | |||||| || ||| | | || ||||| ||||| || | Sbjct 109278 CGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTT 109219 Query 66795 CGATGAC 66801 ||||||| Sbjct 109218 CGATGAC 109212 >seq444 Length=118335 Score = 127 bits (140), Expect = 2e-24 Identities = 286/424 (67%), Gaps = 7/424 (2%) Strand=Plus/Plus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 ||||||||| | || ||||| || | || ||| | ||||| ||| | ||||| ||||| Sbjct 61100 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGT 61159 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 |||||||| |||||||||||| ||| ||| | || || || || ||||| | || Sbjct 61160 CTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACC 61219 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 || ||||| | || || || || | || ||| || || || || | Sbjct 61220 GACTTTGC---CTGCCTCCTC-TACTCTCACCTCAAGAACCGCCCCAGCAAGCAGGTCAT 61275 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | || ||| || || || || | ||||| ||||| || ||||| || ||| |||| Sbjct 61276 TGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC 61335 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | || |||||||||| | || ||| |||||| ||||| || || || || Sbjct 61336 TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGA 61395 Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 |||||| ||||| | | |||| |||| || |||| || | || || || || | Sbjct 61396 CCGTCTCTTGGTTGCTCTTGGCAATGACAAGG-TCTACAAGTCTTCCAATCCGTTCGACT 61454 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 | ||||| | || || |||| |||||||| || || || ||||| ||||| | ||||| Sbjct 61455 TTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACT 61514 Query 61928 ATCA 61931 | || Sbjct 61515 ACCA 61518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562980207040