Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq431 360 2e-94
seq444 127 2e-24
>seq431
Length=114165
Score = 360 bits (398), Expect = 2e-94
Identities = 1145/1747 (66%), Gaps = 64/1747 (4%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | |||||| |||| || | || ||||||||||| |||
Sbjct 110917 TCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 110858
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|| || || ||| ||| | ||| ||||| | || | ||||||| | |||| |
Sbjct 110857 TTCAGACCGAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCATGGTCGGGT 110800
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || || | |||||| ||| || ||| | |||||| || |||||||
Sbjct 110799 CCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGCCA 110740
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | | || ||| || || ||||| || |||||||||||| | | | ||||||
Sbjct 110739 TCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGG-GCCTTGACCTCA 110681
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
| || || | |||| ||||| ||||| ||||| ||||| || |||
Sbjct 110680 GTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 110621
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430
| || ||||||||||||| |||| ||| | | || ||||| | |||| |||
Sbjct 110620 GCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGG----TTGACGAC 110565
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
|||||||| || | || ||||| || ||||||||||| ||| ||| |||||| |
Sbjct 110564 CTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCA 110505
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
|| ||||||| | || || | || ||||| |||||||| ||||| | | ||
Sbjct 110504 CTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGA 110445
Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGT 65608
||| || | |||| | | || | | ||| ||||||||| ||| | || |
Sbjct 110444 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCG- 110386
Query 65609 TTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667
| | | ||||| | ||||| || | || ||| | || | | | || ||
Sbjct 110385 --AGGGCTTGACATTC------CACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGA 110334
Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724
||| | | | | ||| |||||||||||||| || || || | |||| |||
Sbjct 110333 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAG 110277
Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCT 65783
|| || || |||||||| || || | || || || || || |||||| ||
Sbjct 110276 GGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 110218
Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840
|| | ||||| | || ||||| | | || || ||||| || || || | ||| |
Sbjct 110217 CGAAGGGCATGCGCAGAGCCAGGA---AGGCATCAGCAAGACCCTGGACACCGAGACCAA 110161
Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900
|||| || ||||||| ||| | ||||| | |||||||||| |||| ||||
Sbjct 110160 TGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGA 110101
Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959
| || | |||| ||||| || || || || ||| | || | ||| ||
Sbjct 110100 TGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTG-GAAGTC- 110043
Query 65960 AAATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017
|| | | | ||| | ||| | ||||| |||| | ||| || || |
Sbjct 110042 ----GTAGACGCCC-TCGTTGTAGT--------CAACAAAGGTGGGCAAGGCGAGCGAGG 109996
Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077
| ||||||||||| || | ||| ||||| ||| ||||||| || || ||||| || |
Sbjct 109995 CCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGT 109936
Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137
| || ||| |||||||| | |||| || || |||||||| ||| ||||||||||
Sbjct 109935 TGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 109876
Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197
| | |||| | || |||| ||||| |||| ||| | |||||| | ||| ||
Sbjct 109875 AGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 109816
Query 66198 GTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256
| ||||||| || | | | |||| || | | ||||| | ||||| | | |||
Sbjct 109815 GGGCCTTCATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCG 109757
Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316
|| || || | |||| ||| | || |||| || || ||||| || | |||
Sbjct 109756 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAG 109697
Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376
|| || | || ||||| | ||| || || || || |||||||| ||| ||| ||
Sbjct 109696 TCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGG 109637
Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436
|| || || || |||||| ||||||| || ||||||| || | ||| || ||||
Sbjct 109636 TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACA 109577
Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496
||||| ||||| || || |||||||||||||| | ||| |||||| |||||| |||
Sbjct 109576 TCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGG 109517
Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556
|||||||||||||| |||||||||||||| | ||| || |||| ||||| || |
Sbjct 109516 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTA 109457
Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616
|| || |||||| | || ||| || || || || ||||| || ||||||||
Sbjct 109456 CCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATG 109397
Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAA 66674
||||||||| |||| ||||| || ||| || | |||| | | || || ||||
Sbjct 109396 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC--GTAGATACCCTCAA 109339
Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGG 66734
| ||||| |||| ||| | |||| |||| || || |||| | || || | |
Sbjct 109338 TAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAG 109279
Query 66735 CCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794
| |||||| ||||| | |||||| || ||| | | || ||||| ||||| || |
Sbjct 109278 CGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTT 109219
Query 66795 CGATGAC 66801
|||||||
Sbjct 109218 CGATGAC 109212
>seq444
Length=118335
Score = 127 bits (140), Expect = 2e-24
Identities = 286/424 (67%), Gaps = 7/424 (2%)
Strand=Plus/Plus
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
||||||||| | || ||||| || | || ||| | ||||| ||| | ||||| |||||
Sbjct 61100 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGT 61159
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629
|||||||| |||||||||||| ||| ||| | || || || || ||||| | ||
Sbjct 61160 CTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACC 61219
Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688
|| ||||| | || || || || | || ||| || || || || |
Sbjct 61220 GACTTTGC---CTGCCTCCTC-TACTCTCACCTCAAGAACCGCCCCAGCAAGCAGGTCAT 61275
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748
| || ||| || || || || | ||||| ||||| || ||||| || ||| ||||
Sbjct 61276 TGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC 61335
Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808
| | || |||||||||| | || ||| |||||| ||||| || || || ||
Sbjct 61336 TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGA 61395
Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867
|||||| ||||| | | |||| |||| || |||| || | || || || || |
Sbjct 61396 CCGTCTCTTGGTTGCTCTTGGCAATGACAAGG-TCTACAAGTCTTCCAATCCGTTCGACT 61454
Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927
| ||||| | || || |||| |||||||| || || || ||||| ||||| | |||||
Sbjct 61455 TTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACT 61514
Query 61928 ATCA 61931
| ||
Sbjct 61515 ACCA 61518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562980207040
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