Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 214 3e-53
seq1278 98.7 1e-18
seq1315 89.7 8e-16
>seq1236
Length=11430
Score = 214 bits (236), Expect = 3e-53
Identities = 174/206 (84%), Gaps = 5/206 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 5551 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5608
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||
Sbjct 5609 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 5668
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | |||||||| ||||||||||
Sbjct 5669 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCTGTCAGTGTAACGCGCGTGCG 5726
Query 180 GCCCAGAACATCTAAGGGCATCACAG 205
|||||| |||||||||||||||||||
Sbjct 5727 GCCCAGGACATCTAAGGGCATCACAG 5752
>seq1278
Length=10311
Score = 98.7 bits (108), Expect = 1e-18
Identities = 143/196 (73%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71
||||||||| ||||||| |||| || ||| | ||||||||| ||| |||| || || |
Sbjct 5935 AGGGACGTAATCAACGCAAGCTA-ATAACTTACACTTACTAGGGATT-CCTCATTAAAAA 5992
Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTG 130
|| |||| |||| |||||| || | | ||||| | |||||||||| |||||
Sbjct 5993 GTAATAATTACAATACTCTATCTTCAGTATAACAGAATTTAATAAGATTACCCAGACCTT 6052
Query 131 TCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189
| |||||| | || |||| | | |||||| || | || ||| |||||||| |
Sbjct 6053 CCAGCCAAG---AGAGTACTCACTAGCTCTATCAGTATAACATGCATGCAGCCCAGAATA 6109
Query 190 TCTAAGGGCATCACAG 205
||||||||||||||||
Sbjct 6110 TCTAAGGGCATCACAG 6125
>seq1315
Length=9210
Score = 89.7 bits (98), Expect = 8e-16
Identities = 96/123 (78%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| |||||||||| | ||| | |||| || || || ||| |||||||||||| ||| |
Sbjct 4653 GTATAAAGGGCAGGAATGTAATTAACGTAAG-TTAATAACTTGCGCTTACTAGGGATT-C 4710
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| || ||||| ||| |||||||||| | ||| | ||| | ||||||
Sbjct 4711 CTCGTTGAAGAGTAATAATTGTAATACTCTATCCCCAGTATGATAGAGTTTAATAAGATT 4770
Query 120 ACC 122
|||
Sbjct 4771 ACC 4773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751986471755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |