Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1236 214 3e-53 seq1278 98.7 1e-18 seq1315 89.7 8e-16 >seq1236 Length=11430 Score = 214 bits (236), Expect = 3e-53 Identities = 174/206 (84%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5551 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5608 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 5609 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 5668 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | |||||||| |||||||||| Sbjct 5669 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCTGTCAGTGTAACGCGCGTGCG 5726 Query 180 GCCCAGAACATCTAAGGGCATCACAG 205 |||||| ||||||||||||||||||| Sbjct 5727 GCCCAGGACATCTAAGGGCATCACAG 5752 >seq1278 Length=10311 Score = 98.7 bits (108), Expect = 1e-18 Identities = 143/196 (73%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 ||||||||| ||||||| |||| || ||| | ||||||||| ||| |||| || || | Sbjct 5935 AGGGACGTAATCAACGCAAGCTA-ATAACTTACACTTACTAGGGATT-CCTCATTAAAAA 5992 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTG 130 || |||| |||| |||||| || | | ||||| | |||||||||| ||||| Sbjct 5993 GTAATAATTACAATACTCTATCTTCAGTATAACAGAATTTAATAAGATTACCCAGACCTT 6052 Query 131 TCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | |||||| | || |||| | | |||||| || | || ||| |||||||| | Sbjct 6053 CCAGCCAAG---AGAGTACTCACTAGCTCTATCAGTATAACATGCATGCAGCCCAGAATA 6109 Query 190 TCTAAGGGCATCACAG 205 |||||||||||||||| Sbjct 6110 TCTAAGGGCATCACAG 6125 >seq1315 Length=9210 Score = 89.7 bits (98), Expect = 8e-16 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||| | ||| | |||| || || || ||| |||||||||||| ||| | Sbjct 4653 GTATAAAGGGCAGGAATGTAATTAACGTAAG-TTAATAACTTGCGCTTACTAGGGATT-C 4710 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| || ||||| ||| |||||||||| | ||| | ||| | |||||| Sbjct 4711 CTCGTTGAAGAGTAATAATTGTAATACTCTATCCCCAGTATGATAGAGTTTAATAAGATT 4770 Query 120 ACC 122 ||| Sbjct 4771 ACC 4773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751986471755