Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 172 3e-41
seq1278 109 3e-22
seq1315 102 5e-20
seq1268 102 5e-20
seq1274 86.0 3e-15
seq1299 73.4 2e-11
>seq1236
Length=11430
Score = 172 bits (190), Expect = 3e-41
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 6765 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6823
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6824 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6880
>seq1278
Length=10311
Score = 109 bits (120), Expect = 3e-22
Identities = 92/112 (82%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63
|| ||| ||||| ||||||||||||||||| | ||| |||||| ||||||||| || ||
Sbjct 7141 CCTAAACACTTTAATTTCTCGTAAGGTGCCAAACGAATCAAAAA-ATAACATCGTCCAAT 7199
Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||||||| |||||||||| ||||||||||| | |||| | ||| |||||
Sbjct 7200 CCCTAGTTAGCATAGTTTATAGTTAAGACTACAATAGTATTTAATCATCTTC 7251
>seq1315
Length=9210
Score = 102 bits (112), Expect = 5e-20
Identities = 85/103 (83%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72
|||||||||| |||||||||||| |||||||||| ||||||| | |||||| |||||
Sbjct 5879 TTTGATTTCTTGTAAGGTGCCGAACGAGTCAAAA-AATAACATTGTCCGATCTCTAGTTA 5937
Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
| |||||||| |||||||||| | |||||||| ||||||
Sbjct 5938 GTATAGTTTATAGTTAAGACTATAATAATATCTGATTGTCTTC 5980
>seq1268
Length=10630
Score = 102 bits (112), Expect = 5e-20
Identities = 85/103 (83%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72
||| |||||||||||| |||||| |||||||| |||| |||| |||||||||| |||
Sbjct 3130 TTTAATTTCTCGTAAGATGCCGAATAAGTCAAAAA-ATAATATCGTCCGATCCCTAATCG 3072
Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
| |||||||| ||||||||||| || |||||| || |||||
Sbjct 3071 GTATAGTTTATAGTTAAGACTACAACAGTATCTAATTATCTTC 3029
>seq1274
Length=10448
Score = 86.0 bits (94), Expect = 3e-15
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70
||||| ||||||||||||||||| | ||||| |||| ||||||| | ||||||||||||
Sbjct 3164 ACTTTAATTTCTCGTAAGGTGCCAAACGAGTTAAAAA-ATAACATTGTCCGATCCCTAGT 3106
Query 71 CGGCATAGTTTACGGTTAAGACTA 94
| |||||||| ||||||| ||
Sbjct 3105 TAGTATAGTTTATAGTTAAGATTA 3082
>seq1299
Length=9828
Score = 73.4 bits (80), Expect = 2e-11
Identities = 80/105 (76%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72
||| |||||||||||||| || | |||||||| |||| || || |||||||||
Sbjct 3016 TTTAATTTCTCGTAAGGTACCAAATAAGTCAAAA-AATAATATTATCCAATCCCTAGTTA 2958
Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
| ||| |||| |||||||||| || |||||| || |||||||
Sbjct 2957 GTATAATTTATAGTTAAGACTATAACAGTATCTAATTATCTTCGA 2913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278395153230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |