Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1236 172 3e-41 seq1278 109 3e-22 seq1315 102 5e-20 seq1268 102 5e-20 seq1274 86.0 3e-15 seq1299 73.4 2e-11 >seq1236 Length=11430 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 6765 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6823 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6824 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6880 >seq1278 Length=10311 Score = 109 bits (120), Expect = 3e-22 Identities = 92/112 (82%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63 || ||| ||||| ||||||||||||||||| | ||| |||||| ||||||||| || || Sbjct 7141 CCTAAACACTTTAATTTCTCGTAAGGTGCCAAACGAATCAAAAA-ATAACATCGTCCAAT 7199 Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||||| |||||||||| ||||||||||| | |||| | ||| ||||| Sbjct 7200 CCCTAGTTAGCATAGTTTATAGTTAAGACTACAATAGTATTTAATCATCTTC 7251 >seq1315 Length=9210 Score = 102 bits (112), Expect = 5e-20 Identities = 85/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 |||||||||| |||||||||||| |||||||||| ||||||| | |||||| ||||| Sbjct 5879 TTTGATTTCTTGTAAGGTGCCGAACGAGTCAAAA-AATAACATTGTCCGATCTCTAGTTA 5937 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | |||||||| |||||||||| | |||||||| |||||| Sbjct 5938 GTATAGTTTATAGTTAAGACTATAATAATATCTGATTGTCTTC 5980 >seq1268 Length=10630 Score = 102 bits (112), Expect = 5e-20 Identities = 85/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 ||| |||||||||||| |||||| |||||||| |||| |||| |||||||||| ||| Sbjct 3130 TTTAATTTCTCGTAAGATGCCGAATAAGTCAAAAA-ATAATATCGTCCGATCCCTAATCG 3072 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | |||||||| ||||||||||| || |||||| || ||||| Sbjct 3071 GTATAGTTTATAGTTAAGACTACAACAGTATCTAATTATCTTC 3029 >seq1274 Length=10448 Score = 86.0 bits (94), Expect = 3e-15 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||| ||||||||||||||||| | ||||| |||| ||||||| | |||||||||||| Sbjct 3164 ACTTTAATTTCTCGTAAGGTGCCAAACGAGTTAAAAA-ATAACATTGTCCGATCCCTAGT 3106 Query 71 CGGCATAGTTTACGGTTAAGACTA 94 | |||||||| ||||||| || Sbjct 3105 TAGTATAGTTTATAGTTAAGATTA 3082 >seq1299 Length=9828 Score = 73.4 bits (80), Expect = 2e-11 Identities = 80/105 (76%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 ||| |||||||||||||| || | |||||||| |||| || || ||||||||| Sbjct 3016 TTTAATTTCTCGTAAGGTACCAAATAAGTCAAAA-AATAATATTATCCAATCCCTAGTTA 2958 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| |||| |||||||||| || |||||| || ||||||| Sbjct 2957 GTATAATTTATAGTTAAGACTATAACAGTATCTAATTATCTTCGA 2913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395153230