Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1236 262 6e-68 seq1304 205 1e-50 seq1278 140 5e-31 seq1315 132 8e-29 seq1274 109 9e-22 seq1302 105 1e-20 seq1273 105 1e-20 seq1299 100 5e-19 seq1250 100 5e-19 seq1262 84.2 3e-14 >seq1236 Length=11430 Score = 262 bits (290), Expect = 6e-68 Identities = 180/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 6096 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 6154 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 6155 ATACTGCCAAAG-CAATATGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 6213 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 6214 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 6273 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 6274 AAAGAGCTCTCAATCTGTC 6292 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 5693 TACTCGCTGGCTCTGTCAGTGTAACGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 5752 >seq1304 Length=9648 Score = 205 bits (226), Expect = 1e-50 Identities = 167/199 (84%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||| Sbjct 6279 ACCTATTATTACCTCAAACTTCTATTAGCTT-AAGCCAATAGTCCCTCTAAGAAGCCAGC 6337 Query 121 CACCAACCATAGTCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | |||| || | || ||||||||||||||||| |||| || ||||| |||| Sbjct 6338 ATACTACCAAAG-CAATATAAACTATTTAGCAGGTTAAGATCTCATTTATTATCATAATT 6396 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || |||| ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| Sbjct 6397 AAGCAGATAAATCACTCCACCAACTAAGAACAGCCATACACTACCACCCATAAAATCAAG 6456 Query 240 AAAGAGCTATCAATCTGTC 258 ||| |||| |||||||||| Sbjct 6457 AAAAAGCTCTCAATCTGTC 6475 >seq1278 Length=10311 Score = 140 bits (154), Expect = 5e-31 Identities = 150/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| | ||||||||| || ||| |||| ||||||||||||||||||||| Sbjct 6469 ACCTATTATTACTTCAAACTTCTATCAGCTT-AAGCTGATAGTCCCTCTAAGAAGCCAGT 6527 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | ||| |||||||||| ||||||| |||| || |||||| ||||| Sbjct 6528 ATACTGCTAAAGTAATATAGGCTATTTAGTAGGTTAAAATCTCATTTGTTATCATAATTA 6587 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | |||| |||||||||||| ||||||||| || || |||||| || | | ||| |||| Sbjct 6588 AGCAGATAAATCACTCCACTAACTAAGAATAGCTATACACCACTACTTACAAAATTAAGA 6647 Query 241 AAGAGCTATCAATCTGT 257 || | || ||||||||| Sbjct 6648 AAAAACTCTCAATCTGT 6664 >seq1315 Length=9210 Score = 132 bits (146), Expect = 8e-29 Identities = 144/190 (76%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||||||| || | | |||| |||| ||||||||||||| || | Sbjct 5203 TTATTACCTTAAACTTCTATCAGTTT-AAGCTAATAATCCCTCTAAGAAGTTAGTATACT 5261 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | | ||| |||||||||| |||||||||||||||| |||||| |||||| || Sbjct 5262 GCTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCGTTTATTATCGCAATTAAGTAG 5321 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||||| |||| || ||||||||| || |||||| || ||||| | ||| |||||| || Sbjct 5322 ACAAATTACTCTACTAACTAAGAATAGCTATGCACTACTACCCACAAAATTAAGAAAAAG 5381 Query 246 CTATCAATCT 255 || | ||||| Sbjct 5382 CTTTTAATCT 5391 >seq1274 Length=10448 Score = 109 bits (120), Expect = 9e-22 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| | ||||||||| || || |||| |||||||||||||||| | || Sbjct 3843 ACCTATTATTACTTCAAACTTCTATCAACTT-AAGCTGATAGTCCCTCTAAGAAACTAGT 3785 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| |||||||||| | ||||| |||||||| |||| ||||| Sbjct 3784 ATACTACTAAAGTAATATAGGCTATTTAGTAAGTTAAAGTCTCGTTTATTATTATAATTA 3725 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| ||| || ||||||||| | || || || ||| ||| ||| |||| Sbjct 3724 AATAGATAAATTACTTTACTAACTAAGAATAGTTATACATTACTACCTATAAAATTAAGA 3665 Query 241 AAGAGCTATCAATCTGT 257 || |||| ||||||||| Sbjct 3664 AAAAGCTCTCAATCTGT 3648 >seq1302 Length=9750 Score = 105 bits (116), Expect = 1e-20 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG----CC 121 ||||| | ||||||||| || | | || | |||||| |||||||||| ||| | Sbjct 3365 TTATTACTTCAAACTTCTATCAGTTTAAA-CTAATAGTTCCTCTAAGAAACCAATATACT 3307 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || || ||| | | ||||||||||||||||| ||| || ||||| |||||| Sbjct 3306 ACTAAA-ATAATATAAA---CTATTTAGCAGGTTAAGATCTTATTTATTATCATAATTAA 3251 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||| |||| || ||||||||| || || ||| || ||| ||| ||||||||| Sbjct 3250 GCAGACAAATTACTCTACTAACTAAGAATAGCTATACACTACTACCTATAAAATCAAGAA 3191 Query 242 AGAGCTATCAATCT 255 | | || | ||||| Sbjct 3190 AAAACTCTTAATCT 3177 >seq1273 Length=10531 Score = 105 bits (116), Expect = 1e-20 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||||||| || ||| || | |||| || ||||||||| | || | Sbjct 6808 TTATTACCTTAAACTTCTATCAGCTTAAA-CTAATAATCTCTCTAAGAAACTAGTATACT 6866 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| ||||||||||||| ||||| ||| || ||||| |||||| || Sbjct 6867 ACTAAAGTAATATAGGCTATTTAGCAGATTAAGATCTTATTTATTATCATAATTAAGTAG 6926 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||||||||||| ||||||||| || || || || ||| | | ||| |||||| || Sbjct 6927 ATAAATCACTCCACTAACTAAGAATAGCTATATACTACTACCTACAAAATTAAGAAAAAG 6986 Query 246 CTATCAATCT 255 || | ||||| Sbjct 6987 CTCTTAATCT 6996 >seq1299 Length=9828 Score = 100 bits (110), Expect = 5e-19 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 || ||||||| | | ||| ||| ||| ||| |||| ||||||| ||||||||| || Sbjct 3697 ACTTGTTATTACTTTAAATTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAATTAGT 3639 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | ||| | |||||||| |||||||||||| ||| ||||| | ||||| Sbjct 3638 ATATTACTAAAGTAATATAGACTATTTAGTAGGTTAAGGTCTTGTTTGTTATTGTAATTA 3579 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| |||| || ||||||||| || || || | || ||| ||| |||| Sbjct 3578 AGTAGATAAATTACTCTACTAACTAAGAATAGCTATATACTATTACTTATAAAATTAAGA 3519 Query 241 AAGAGCTATCAATCT 255 || |||| | ||||| Sbjct 3518 AAAAGCTCTTAATCT 3504 >seq1250 Length=11053 Score = 100 bits (110), Expect = 5e-19 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 ||||||| ||| | | |||| |||||| |||||||||| || | | ||| Sbjct 3754 AAACTTCTATTAGTTT-AAGCTGATAGTCTCTCTAAGAAGTTAGTATACTGTTAAAGTAA 3696 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| ||||||| |||||||||||||||| ||||| |||||| ||| |||| | | Sbjct 3695 TATGGGTTATTTAGTAGGTTAAGGTCTCGTTTGTTATTATAATTAAGTAGATAAATTATT 3636 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || ||||||||| ||| ||| | || ||| ||| ||| ||||||||| | | ||||| Sbjct 3635 TTACTAACTAAGAATGGCTATGTATTACTACCTATAAAATTAAGAAAGAGTTTTTAATCT 3576 Query 256 GT 257 || Sbjct 3575 GT 3574 >seq1262 Length=10766 Score = 84.2 bits (92), Expect = 3e-14 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| | ||||||||| ||| | | |||| ||||| ||||||||||| || Sbjct 7175 TTATTACTTCAAACTTCTATTAGTTT-AAGCTGATAGTTCCTCTAAGAAGTTAGTATATT 7233 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| || ||||||| |||||||||| | || |||| |||||| || Sbjct 7234 ACTAAAGTAATATAGGTTATTTAGTAGGTTAAGGTTTTATTTATTATTATAATTAAGTAG 7293 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| ||| || ||||||||| | ||| | || ||| ||| ||| ||||||||| Sbjct 7294 ATAAATTACTTTACTAACTAAGAATAGTTATGTATTACTACCTATAAAATTAAGAAAGAG 7353 Query 246 CTATCAAT 253 || | ||| Sbjct 7354 CTTTTAAT 7361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785665817