Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 262 6e-68
seq1304 205 1e-50
seq1278 140 5e-31
seq1315 132 8e-29
seq1274 109 9e-22
seq1302 105 1e-20
seq1273 105 1e-20
seq1299 100 5e-19
seq1250 100 5e-19
seq1262 84.2 3e-14
>seq1236
Length=11430
Score = 262 bits (290), Expect = 6e-68
Identities = 180/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 6096 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 6154
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 6155 ATACTGCCAAAG-CAATATGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 6213
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 6214 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 6273
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 6274 AAAGAGCTCTCAATCTGTC 6292
Score = 91.5 bits (100), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 5693 TACTCGCTGGCTCTGTCAGTGTAACGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 5752
>seq1304
Length=9648
Score = 205 bits (226), Expect = 1e-50
Identities = 167/199 (84%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 6279 ACCTATTATTACCTCAAACTTCTATTAGCTT-AAGCCAATAGTCCCTCTAAGAAGCCAGC 6337
Query 121 CACCAACCATAGTCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| |||| || | || ||||||||||||||||| |||| || ||||| ||||
Sbjct 6338 ATACTACCAAAG-CAATATAAACTATTTAGCAGGTTAAGATCTCATTTATTATCATAATT 6396
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| |||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||||
Sbjct 6397 AAGCAGATAAATCACTCCACCAACTAAGAACAGCCATACACTACCACCCATAAAATCAAG 6456
Query 240 AAAGAGCTATCAATCTGTC 258
||| |||| ||||||||||
Sbjct 6457 AAAAAGCTCTCAATCTGTC 6475
>seq1278
Length=10311
Score = 140 bits (154), Expect = 5e-31
Identities = 150/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| | ||||||||| || ||| |||| |||||||||||||||||||||
Sbjct 6469 ACCTATTATTACTTCAAACTTCTATCAGCTT-AAGCTGATAGTCCCTCTAAGAAGCCAGT 6527
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| | | ||| |||||||||| ||||||| |||| || |||||| |||||
Sbjct 6528 ATACTGCTAAAGTAATATAGGCTATTTAGTAGGTTAAAATCTCATTTGTTATCATAATTA 6587
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| |||| |||||||||||| ||||||||| || || |||||| || | | ||| ||||
Sbjct 6588 AGCAGATAAATCACTCCACTAACTAAGAATAGCTATACACCACTACTTACAAAATTAAGA 6647
Query 241 AAGAGCTATCAATCTGT 257
|| | || |||||||||
Sbjct 6648 AAAAACTCTCAATCTGT 6664
>seq1315
Length=9210
Score = 132 bits (146), Expect = 8e-29
Identities = 144/190 (76%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||||||| || | | |||| |||| ||||||||||||| || |
Sbjct 5203 TTATTACCTTAAACTTCTATCAGTTT-AAGCTAATAATCCCTCTAAGAAGTTAGTATACT 5261
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| | ||| |||||||||| |||||||||||||||| |||||| |||||| ||
Sbjct 5262 GCTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCGTTTATTATCGCAATTAAGTAG 5321
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
|||||| |||| || ||||||||| || |||||| || ||||| | ||| |||||| ||
Sbjct 5322 ACAAATTACTCTACTAACTAAGAATAGCTATGCACTACTACCCACAAAATTAAGAAAAAG 5381
Query 246 CTATCAATCT 255
|| | |||||
Sbjct 5382 CTTTTAATCT 5391
>seq1274
Length=10448
Score = 109 bits (120), Expect = 9e-22
Identities = 143/197 (73%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| | ||||||||| || || |||| |||||||||||||||| | ||
Sbjct 3843 ACCTATTATTACTTCAAACTTCTATCAACTT-AAGCTGATAGTCCCTCTAAGAAACTAGT 3785
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| |||||||||| | ||||| |||||||| |||| |||||
Sbjct 3784 ATACTACTAAAGTAATATAGGCTATTTAGTAAGTTAAAGTCTCGTTTATTATTATAATTA 3725
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| ||| || ||||||||| | || || || ||| ||| ||| ||||
Sbjct 3724 AATAGATAAATTACTTTACTAACTAAGAATAGTTATACATTACTACCTATAAAATTAAGA 3665
Query 241 AAGAGCTATCAATCTGT 257
|| |||| |||||||||
Sbjct 3664 AAAAGCTCTCAATCTGT 3648
>seq1302
Length=9750
Score = 105 bits (116), Expect = 1e-20
Identities = 142/194 (73%), Gaps = 9/194 (5%)
Strand=Plus/Minus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG----CC 121
||||| | ||||||||| || | | || | |||||| |||||||||| ||| |
Sbjct 3365 TTATTACTTCAAACTTCTATCAGTTTAAA-CTAATAGTTCCTCTAAGAAACCAATATACT 3307
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| || ||| | | ||||||||||||||||| ||| || ||||| ||||||
Sbjct 3306 ACTAAA-ATAATATAAA---CTATTTAGCAGGTTAAGATCTTATTTATTATCATAATTAA 3251
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||| |||| || ||||||||| || || ||| || ||| ||| |||||||||
Sbjct 3250 GCAGACAAATTACTCTACTAACTAAGAATAGCTATACACTACTACCTATAAAATCAAGAA 3191
Query 242 AGAGCTATCAATCT 255
| | || | |||||
Sbjct 3190 AAAACTCTTAATCT 3177
>seq1273
Length=10531
Score = 105 bits (116), Expect = 1e-20
Identities = 138/190 (73%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||||||| || ||| || | |||| || ||||||||| | || |
Sbjct 6808 TTATTACCTTAAACTTCTATCAGCTTAAA-CTAATAATCTCTCTAAGAAACTAGTATACT 6866
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| ||||||||||||| ||||| ||| || ||||| |||||| ||
Sbjct 6867 ACTAAAGTAATATAGGCTATTTAGCAGATTAAGATCTTATTTATTATCATAATTAAGTAG 6926
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||||||||||| ||||||||| || || || || ||| | | ||| |||||| ||
Sbjct 6927 ATAAATCACTCCACTAACTAAGAATAGCTATATACTACTACCTACAAAATTAAGAAAAAG 6986
Query 246 CTATCAATCT 255
|| | |||||
Sbjct 6987 CTCTTAATCT 6996
>seq1299
Length=9828
Score = 100 bits (110), Expect = 5e-19
Identities = 140/195 (72%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|| ||||||| | | ||| ||| ||| ||| |||| ||||||| ||||||||| ||
Sbjct 3697 ACTTGTTATTACTTTAAATTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAATTAGT 3639
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|| | ||| | |||||||| |||||||||||| ||| ||||| | |||||
Sbjct 3638 ATATTACTAAAGTAATATAGACTATTTAGTAGGTTAAGGTCTTGTTTGTTATTGTAATTA 3579
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| |||| || ||||||||| || || || | || ||| ||| ||||
Sbjct 3578 AGTAGATAAATTACTCTACTAACTAAGAATAGCTATATACTATTACTTATAAAATTAAGA 3519
Query 241 AAGAGCTATCAATCT 255
|| |||| | |||||
Sbjct 3518 AAAAGCTCTTAATCT 3504
>seq1250
Length=11053
Score = 100 bits (110), Expect = 5e-19
Identities = 132/182 (73%), Gaps = 1/182 (1%)
Strand=Plus/Minus
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135
||||||| ||| | | |||| |||||| |||||||||| || | | |||
Sbjct 3754 AAACTTCTATTAGTTT-AAGCTGATAGTCTCTCTAAGAAGTTAGTATACTGTTAAAGTAA 3696
Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195
||| ||||||| |||||||||||||||| ||||| |||||| ||| |||| | |
Sbjct 3695 TATGGGTTATTTAGTAGGTTAAGGTCTCGTTTGTTATTATAATTAAGTAGATAAATTATT 3636
Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| ||||||||| ||| ||| | || ||| ||| ||| ||||||||| | | |||||
Sbjct 3635 TTACTAACTAAGAATGGCTATGTATTACTACCTATAAAATTAAGAAAGAGTTTTTAATCT 3576
Query 256 GT 257
||
Sbjct 3575 GT 3574
>seq1262
Length=10766
Score = 84.2 bits (92), Expect = 3e-14
Identities = 132/188 (70%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| | ||||||||| ||| | | |||| ||||| ||||||||||| ||
Sbjct 7175 TTATTACTTCAAACTTCTATTAGTTT-AAGCTGATAGTTCCTCTAAGAAGTTAGTATATT 7233
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| || ||||||| |||||||||| | || |||| |||||| ||
Sbjct 7234 ACTAAAGTAATATAGGTTATTTAGTAGGTTAAGGTTTTATTTATTATTATAATTAAGTAG 7293
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| ||| || ||||||||| | ||| | || ||| ||| ||| |||||||||
Sbjct 7294 ATAAATTACTTTACTAACTAAGAATAGTTATGTATTACTACCTATAAAATTAAGAAAGAG 7353
Query 246 CTATCAAT 253
|| | |||
Sbjct 7354 CTTTTAAT 7361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796785665817
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |