Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 168 8e-40
seq1278 102 1e-19
seq1304 98.7 1e-18
seq1302 93.3 5e-17
seq1262 77.0 4e-12
>seq1236
Length=11430
Score = 168 bits (186), Expect = 8e-40
Identities = 154/192 (80%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 7024 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 7083
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| |||| |||||||||||| |||| | |||
Sbjct 7084 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 7143
Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
|| ||| |||| ||||| ||| ||| || | ||| | || |||| | |||
Sbjct 7144 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 7203
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 7204 GTGAGGCGGACC 7215
>seq1278
Length=10311
Score = 102 bits (112), Expect = 1e-19
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | || ||||||||||||||| || ||||| ||||||
Sbjct 7397 CTAGAAACTAATAAAATAGAATCATACATCCTATTCTATTATTTTATACTAATATATTCG 7456
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
| ||||||| | | || |||||||||||| |||| ||||||||||| ||||
Sbjct 7457 AGTATAAGCCTACCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTATTTCC 7510
>seq1304
Length=9648
Score = 98.7 bits (108), Expect = 1e-18
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| |||||||||| ||| |||||||||||||||| || ||||| ||||
Sbjct 7207 CTAGAAACTAACAAAATAGAACTACACATCCTATTCTATTATTCTATACTAATATATTTA 7266
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
| ||| ||| | | || |||||||||||| | || |||||||||||| ||||
Sbjct 7267 AGTATAAACCTACCTGGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCC 7320
>seq1302
Length=9750
Score = 93.3 bits (102), Expect = 5e-17
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||| ||||||||||||||| | ||| | ||||||||||||||||| ||||| |||||
Sbjct 2442 CTAAAAACCAACAAAATAGAACCACACATTCTATTCTATTATTCCATACTAATATATTCA 2383
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
||| ||| | | | || ||||||||| |||| ||||| |||| |||| | |||
Sbjct 2382 AATATAAACCTACCTAAAGCATTCTAATTTTTTCAAAATAAAAATCCTATTTCCCCAGCA 2323
Query 126 CACC 129
||||
Sbjct 2322 CACC 2319
>seq1262
Length=10766
Score = 77.0 bits (84), Expect = 4e-12
Identities = 86/115 (75%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | || ||||||||||||| || ||||||||||
Sbjct 8098 CTAGAAACTAATAAAATAGAATTATATATCTTATTCTATTATTCTATACTAATGTATTTA 8157
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
| || |||||||| || | ||||||||| | || |||||||| ||| || ||
Sbjct 8158 AGTATAGGCCTGCTTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTTCT 8212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595189292538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |