Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1236 168 8e-40 seq1278 102 1e-19 seq1304 98.7 1e-18 seq1302 93.3 5e-17 seq1262 77.0 4e-12 >seq1236 Length=11430 Score = 168 bits (186), Expect = 8e-40 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 7024 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 7083 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 7084 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 7143 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 7144 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 7203 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 7204 GTGAGGCGGACC 7215 >seq1278 Length=10311 Score = 102 bits (112), Expect = 1e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | || ||||||||||||||| || ||||| |||||| Sbjct 7397 CTAGAAACTAATAAAATAGAATCATACATCCTATTCTATTATTTTATACTAATATATTCG 7456 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | ||||||| | | || |||||||||||| |||| ||||||||||| |||| Sbjct 7457 AGTATAAGCCTACCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTATTTCC 7510 >seq1304 Length=9648 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| ||| |||||||||||||||| || ||||| |||| Sbjct 7207 CTAGAAACTAACAAAATAGAACTACACATCCTATTCTATTATTCTATACTAATATATTTA 7266 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | ||| ||| | | || |||||||||||| | || |||||||||||| |||| Sbjct 7267 AGTATAAACCTACCTGGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCC 7320 >seq1302 Length=9750 Score = 93.3 bits (102), Expect = 5e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| ||||||||||||||| | ||| | ||||||||||||||||| ||||| ||||| Sbjct 2442 CTAAAAACCAACAAAATAGAACCACACATTCTATTCTATTATTCCATACTAATATATTCA 2383 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| ||| | | | || ||||||||| |||| ||||| |||| |||| | ||| Sbjct 2382 AATATAAACCTACCTAAAGCATTCTAATTTTTTCAAAATAAAAATCCTATTTCCCCAGCA 2323 Query 126 CACC 129 |||| Sbjct 2322 CACC 2319 >seq1262 Length=10766 Score = 77.0 bits (84), Expect = 4e-12 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | || ||||||||||||| || |||||||||| Sbjct 8098 CTAGAAACTAATAAAATAGAATTATATATCTTATTCTATTATTCTATACTAATGTATTTA 8157 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 | || |||||||| || | ||||||||| | || |||||||| ||| || || Sbjct 8158 AGTATAGGCCTGCTTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTTCT 8212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595189292538