Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1236 269 3e-70 seq1304 179 4e-43 seq1278 179 4e-43 seq1302 152 5e-35 seq1268 150 2e-34 seq1262 140 3e-31 seq1274 131 2e-28 seq1299 129 6e-28 seq1315 123 3e-26 seq1325 116 4e-24 seq1273 109 6e-22 seq1263 102 8e-20 seq1250 100 3e-19 >seq1236 Length=11430 Score = 269 bits (298), Expect = 3e-70 Identities = 175/191 (92%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 7137 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 7078 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 7077 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 7019 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 7018 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 6959 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 6958 TTGGATTTATT 6948 >seq1304 Length=9648 Score = 179 bits (198), Expect = 4e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| | || | | ||| | | || |||| Sbjct 7320 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTCCAGGTAGGTTTATACTTAAATA 7261 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||||||||||| ||| |||||||||||| ||||||||||| | Sbjct 7260 TATTAGTATAGAATAATAGAATAGGATGTGTAGTTCTATTTTGTTAGTTTCTAGGACTG- 7202 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | ||||| || |||| ||||||| ||||| | |||||| |||| | | ||||||||||| Sbjct 7201 CTGTAATAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 7142 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 7141 TTGGATTTATT 7131 >seq1278 Length=10311 Score = 179 bits (198), Expect = 4e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||||||||||||||| | || | | |||| | | |||||||| Sbjct 7510 GGAAATAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGTAGGCTTATACTCGAATA 7451 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||||||||||| || | ||||||||| | |||||||||| | Sbjct 7450 TATTAGTATAAAATAATAGAATAGGATGTATGATTCTATTTTATTAGTTTCTAGGATTG- 7392 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||| || |||| ||||||| |||||| | |||||| |||| ||| | ||||||||| Sbjct 7391 CCGTAATAATTAATAGGGATAGTTGGGGGTATTAGTATTTAATTATCAGAAGTGAAATTC 7332 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 7331 TTAGATTTATT 7321 >seq1302 Length=9750 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||| ||||| ||||||||||||||| | | | | ||| | | | ||||| Sbjct 2329 GGAAATAGGATTTTTATTTTGAAAAAATTAGAATGCTTTAGGTAGGTTTATATTTGAATA 2388 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||||||||||||||||| | ||| ||||||||||||| ||||| ||||| | Sbjct 2389 TATTAGTATGGAATAATAGAATAGAATGTGTGGTTCTATTTTGTTGGTTTTTAGGATTG- 2447 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||||||| |||| ||||||| | ||| | |||||| |||| ||| | |||||||| Sbjct 2448 CTGTAATGATTAATAGGGATAGTTAGAGGTATTAGTATTTAATTATCAGAAGTGAAATTT 2507 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2508 TTAGATTTATT 2518 >seq1268 Length=10630 Score = 150 bits (166), Expect = 2e-34 Identities = 145/185 (78%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||||||||| ||||||||||||||| | || | | || ||| | || |||| |||| Sbjct 2776 AGGACTTTTATTTTGAAAAAATTAGAATGCTCTAGGTAGACCTATACTTAAATATATTAG 2835 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 || ||||||||||||||| || | || |||||| | ||||||||||||| ||| Sbjct 2836 TATAAAATAATAGAATAGGATGTATGATTTTATTTTATTAGTTTCTAGGACCG-TTATAA 2894 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || |||| ||| |||||| ||| | |||||| |||| ||| ||||||||||||| ||| Sbjct 2895 TAATTAATAGGGACAGTCGGAGGTATTAGTATTTAATTATCAGAGGTGAAATTCTTAGAT 2954 Query 187 TTATT 191 ||||| Sbjct 2955 TTATT 2959 >seq1262 Length=10766 Score = 140 bits (154), Expect = 3e-31 Identities = 145/189 (77%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62 || ||| ||||||||||| ||||||||||| || |||||||||| | || |||||| Sbjct 8209 AAACAGAACTTTTACTTTAAAAAAATTAGAATACTCCAAGCAGGCCTATACTTAAATACA 8150 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 ||| || ||||||||||||| || | ||||||||| | |||||||||||| | Sbjct 8149 TTAGTATAGAATAATAGAATAAGATATATAATTCTATTTTATTAGTTTCTAGGACC-ACT 8091 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||| || |||| ||||| | | | |||||||| |||| ||| | ||||||||||| Sbjct 8090 ATAATAATTAATAGGGATAATTAGAAATATCAGTATTTAATTATCAGAAGTGAAATTCTT 8031 Query 183 GGATTTATT 191 |||||||| Sbjct 8030 AGATTTATT 8022 >seq1274 Length=10448 Score = 131 bits (144), Expect = 2e-28 Identities = 143/189 (76%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62 || ||||||||||||||| ||||||||||| | || | ||| | | | || |||| | Sbjct 2804 AAACAGGACTTTTACTTTAAAAAAATTAGAATGCTCCAGACAGACTTATACTTAAATATA 2863 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 ||| || |||||||||||||||| | ||||||||| | |||||||||| | Sbjct 2864 TTAATATAGAATAATAGAATAGGATATATAATTCTATTTTATTAGTTTCTAGGA-CTATT 2922 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||| || |||| ||| |||||| || | |||||| |||| | | |||||||||| || Sbjct 2923 ATAATAATTAATAGGGACAGTCGGAAGTATTAGTATTTAATTATTAGAGGTGAAATTTTT 2982 Query 183 GGATTTATT 191 ||||||||| Sbjct 2983 GGATTTATT 2991 >seq1299 Length=9828 Score = 129 bits (142), Expect = 6e-28 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| ||||||||||| || | | || | | || |||| Sbjct 2656 GGAAACAGGACTTTTACTTTAAAAAAATTAGAATACTCCAGATAAGCTTATACTTAAATA 2715 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||||||||||| | |||||||||| | |||||||||||| Sbjct 2716 TATTAGTATAGAATAATAGAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGACC-A 2774 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| || || | |||||| |||| | | | |||||||| Sbjct 2775 CTATAATAATTAATAGGGATAGTTAGGAGTATTAGTATTTAATTATTAGAAGTGAAATTT 2834 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2835 TTAGATTTATT 2845 >seq1315 Length=9210 Score = 123 bits (136), Expect = 3e-26 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 ||| || |||||||||||| ||||||||||| | || | | | |||| | || |||| Sbjct 6238 GAAACAAGACTTTTACTTTAAAAAAATTAGAATGCTCCAGGTAAGCCTATACTTAAATAT 6179 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| || |||||||||||||| | | ||||||||| | |||||||||| | Sbjct 6178 ATTAGTATAGAATAATAGAATAGAATATATAATTCTATTTTATTAGTTTCTAGGA-TTAC 6120 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||| || |||| ||| ||| || || |||||||| |||| | | | |||||||||| Sbjct 6119 TATAATAATTAATAGGGACAGTTAGGAGTATCAGTATTTAATTATTAGAAGTGAAATTCT 6060 Query 182 TGGATTTATT 191 | |||||||| Sbjct 6059 TAGATTTATT 6050 >seq1325 Length=9050 Score = 116 bits (128), Expect = 4e-24 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||| ||| ||||||||||| | | | | || | | || |||| Sbjct 6182 GGAAATAGGACTTTTATTTTAAAAAAATTAGAATACTTCAGGTAAGCTTATACTTAAATA 6123 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||||||||| | | ||||||||| | |||||||||| | Sbjct 6122 TATTAATATAGAATAATAGAATAGAATATATAATTCTATTTTATTAGTTTCTAGGATCAT 6063 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||| || |||| ||||||| || || | |||||| |||||| | ||||||||||| Sbjct 6062 TA-TAATAATTAATAGGGATAGTTGGAAGTATTAGTATTTAATTGTTAGAGGTGAAATTC 6004 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 6003 TTAGATTTATT 5993 >seq1273 Length=10531 Score = 109 bits (120), Expect = 6e-22 Identities = 136/185 (74%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||| ||||||||| ||||||||||| | || | | | || | | | |||| |||| Sbjct 7838 AGGATTTTTACTTTAAAAAAATTAGAATGCTCCAGGTAAGCTTATATTTAAATAAATTAG 7779 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 || |||||||| ||||||| | | ||| |||||| | |||||||||||| | ||| Sbjct 7778 TATAGAATAATAAAATAGGATATACAGTTTTATTTTATTAGTTTCTAGGACC-ACTATAA 7720 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | |||| ||| ||| || | | |||||| |||| | | | ||||||||||| ||| Sbjct 7719 TAAATAATAGGGACAGTTAGGAATATTAGTATTTAATTATGAGAAGTGAAATTCTTAGAT 7660 Query 187 TTATT 191 ||||| Sbjct 7659 TTATT 7655 >seq1263 Length=10760 Score = 102 bits (112), Expect = 8e-20 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || | ||||||||| |||| |||||| || | | || | | | | |||| Sbjct 2646 GGAAATAGAATTTTTACTTTAAAAAGATTAGAATATTTTAGGTAGACTTATATTTAAATA 2705 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| ||||||| | |||||||||| | |||||||||| | Sbjct 2706 TATTAGTATAGAATAATAAAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGATTGT 2765 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||| || |||| ||||||| || || | |||||| |||| | | | ||||||||| Sbjct 2766 TA-TAATAATTAATAGGGATAGTTAGGAGTATTAGTATTTAATTATTAGAAGTGAAATTC 2824 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2825 TTAGATTTATT 2835 >seq1250 Length=11053 Score = 100 bits (110), Expect = 3e-19 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 ||| ||| ||||||||||| ||||||||| | || | | ||| | ||| |||| Sbjct 2729 GAAACAGAACTTTTACTTTAAAAAAATTAAAATACTCCAGATAAACCTATACTCAAATAT 2788 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| ||| ||||||| |||| || | ||||||||| | |||||||| ||| | Sbjct 2789 ATTAACATAAAATAATAAAATAAGATATATAATTCTATTTTATTAGTTTCTAGAACC-AC 2847 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||| || |||| || |||| || || |||||||| |||| ||| | | ||||||| Sbjct 2848 TATAATAATTAATAGAGACAGTCAGGAGTATCAGTATTTAATTATCAGAAATAAAATTCT 2907 Query 182 TGGATTTATT 191 | ||||||| Sbjct 2908 TAAATTTATT 2917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511990789280