Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1236 300 3e-79 seq1268 188 1e-45 seq1278 170 4e-40 seq1304 165 2e-38 seq1315 156 8e-36 seq1262 118 2e-24 seq356 102 2e-19 seq1302 87.8 3e-15 seq1273 82.4 1e-13 >seq1236 Length=11430 Score = 300 bits (332), Expect = 3e-79 Identities = 190/203 (94%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| Sbjct 5752 CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGTTACACTGACAGAGCCAGCGAGTA 5693 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 5692 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 5635 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| Sbjct 5634 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5575 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 5574 TGATTACGTCCCTGCCCTTTGTA 5552 Score = 138 bits (152), Expect = 2e-30 Identities = 94/106 (89%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| |||||||| | || |||||||||| Sbjct 6201 GAACGAGACCTTAACCTGCTAAATAGCCCATATTGCTTTGGCAGTATGCTGGCTTCTTAG 6142 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6141 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 6096 >seq1268 Length=10630 Score = 188 bits (208), Expect = 1e-45 Identities = 165/203 (81%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||| |||||| || | ||| ||| ||||| || ||||| ||||| | |||| Sbjct 4155 CTGTGATGCCTTTAGATATTTTAGGCTGCATGCGCGTTATACTGATAGAGCTAGTGAGTA 4214 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||| Sbjct 4215 C-TC-CCTTGGCTGGAAGGTTTGGGTAATCTTATTAAACTCTGTTGTGCTGGGGATAGAG 4272 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||| ||||||| | || |||||||||| ||||||||||| || || ||| ||| Sbjct 4273 TATTATAATTATTATTTTTTAACGAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGT 4332 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | |||||||| ||||| |||||| Sbjct 4333 TAATTACGTCTCTGCCTTTTGTA 4355 Score = 73.4 bits (80), Expect = 7e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||| ||| |||| ||| ||||||||||| |||||||||| Sbjct 3757 GCTTCTTAGAGGGACTATTAGCTTAAGCTGATAGAAGTTTGAGGTAATAACAGGT 3811 >seq1278 Length=10311 Score = 170 bits (188), Expect = 4e-40 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||| |||||||| ||| || | || ||||| ||||| | |||| Sbjct 6125 CTGTGATGCCCTTAGATATTCTGGGCTGCATGCATGTTATACTGATAGAGCTAGTGAGTA 6066 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || | ||||| ||||||||||||||||||| ||||| ||||| | ||| ||||||| Sbjct 6065 C-TCTC-TTGGCTGGAAGGTCTGGGTAATCTTATTAAATTCTGTTATACTGAAGATAGAG 6008 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||||| || || || ||||||| ||||||||| | || || ||| |||| Sbjct 6007 TATTGTAATTATTACTTTTTAATGAGGAATCCCTAGTAAGTGTAAGTTATTAGCTTGCGT 5948 Query 306 TGATTACGTCCCT 318 ||||||||||||| Sbjct 5947 TGATTACGTCCCT 5935 Score = 77.0 bits (84), Expect = 6e-12 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83 |||| ||||||| |||||||||| |||| || | | |||||||||||||| Sbjct 6570 GAGATTTTAACCTACTAAATAGCCTATATTACTTTAGCAGTATACTGGCTTCTTAGAGGG 6511 Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||| ||| |||| ||| ||||||||| | ||||| |||| Sbjct 6510 ACTATCAGCTTAAGCTGATAGAAGTTTGAAGTAATAATAGGT 6469 >seq1304 Length=9648 Score = 165 bits (182), Expect = 2e-38 Identities = 160/203 (79%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||| ||||||||| |||||| | | | | | || |||||||||| | |||| Sbjct 5935 CTGTGATGCTCTTAGATGTCCTGGGCTGTATGTGTGTTATACTGACAGAGTTAGTGAGTA 5876 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || | ||||| ||||||||||||||||||| ||||||||| | ||||||||||||||| Sbjct 5875 C-TCTC-TTGGCTGGAAGGTCTGGGTAATCTTATTAAACTCTATTGTGCTGGGGATAGAG 5818 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| |||||||||| || || ||||||| ||||||||| | || ||||| || Sbjct 5817 TATTGTAATTATTGCTTTTTAATGAGGAATCCCTAGTAAGTGTAAGTTATCAGTTTATGT 5758 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| || |||| ||| || Sbjct 5757 TGATTATATCTCTGCTTTTTATA 5735 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83 |||| ||||||||||||||||| ||||||| | || |||||||||||||| Sbjct 6380 GAGATCTTAACCTGCTAAATAGTTTATATTGCTTTGGTAGTATGCTGGCTTCTTAGAGGG 6321 Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||||| |||| |||| || ||||||||||| ||||| |||| Sbjct 6320 ACTATTGGCTTAAGCTAATAGAAGTTTGAGGTAATAATAGGT 6279 >seq1315 Length=9210 Score = 156 bits (172), Expect = 8e-36 Identities = 155/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || || |||||| | || ||||||||| | || ||||||||| ||| | | | || Sbjct 4849 ATACCTTTAGATATCCTAAGCCGCACGCACATTATACTGACAGAACCAGTAAATAC-TC- 4792 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || |||| | || ||||||||| ||||||||| || | |||||||||||| ||| Sbjct 4791 CCTTAGCTGGAAAGCCTAGGTAATCTTATTAAACTCTATCATACTGGGGATAGAGTATTA 4732 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| |||||||||||||||| |||||||||||| || || | | |||| ||| Sbjct 4731 CAATTATTACTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTTATTAACTTACGTTAATT 4672 Query 311 ACGTCCCTGCCCTTTGTA 328 || | |||||||||| || Sbjct 4671 ACATTCCTGCCCTTTATA 4654 >seq1262 Length=10766 Score = 118 bits (130), Expect = 2e-24 Identities = 120/154 (78%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || || |||||| |||| ||| ||||| | |||||||||||||||| ||| | || Sbjct 6821 ATACCTTTAGATATTCTAAGCCACACGCACATTACACTGACAGAGCCAGTAAGTAC-TC- 6764 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || |||| |||| ||||| |||||||||||| | | ||| |||||||| ||| Sbjct 6763 CCTTAGCTGGAAAGTCTAAGTAATTTTGTTAAACTCTATTATACTGAGGATAGAGTATTA 6704 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||||||| ||||| || |||||| |||||||| Sbjct 6703 TAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6670 >seq356 Length=88761 Score = 102 bits (112), Expect = 2e-19 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 54296 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCGATTGATATTCTTCAAAA 54237 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||| ||| ||| ||| ||| || || ||| ||| |||||||||||| Sbjct 54236 AGAAAGCCCTCGTATTCGCAAGTCGTCAATTTGCACTGGTTATGTCTCTGCCCTTTGTA 54178 >seq1302 Length=9750 Score = 87.8 bits (96), Expect = 3e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| ||||||||||| || ||||| ||| | |||||||||||||| ||| |||||||| Sbjct 3786 GAAAGTCTGGGTAATTTTATTAAATTCTATTATGCTGGGGATAGAGTATTATAATTATTG 3845 Query 260 CTCTTCAACGAGGAATGCCTAGTAAG 285 || || || ||||||| |||||||| Sbjct 3846 CTTTTTAATGAGGAATCTCTAGTAAG 3871 >seq1273 Length=10531 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| || ||||||||| ||||| || ||||||||| | | |||||||||||| ||| Sbjct 6395 CTTAGCTGGAAGGTCTAAGTAATTTTATTAAACTCTATTATACTGGGGATAGAGTATTAT 6336 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||||||| || || || |||||| |||||||| Sbjct 6335 AATTATTACTTTTTAATAAGGAATTCCTAGTAA 6303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182410496