Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 300 3e-79
seq1268 188 1e-45
seq1278 170 4e-40
seq1304 165 2e-38
seq1315 156 8e-36
seq1262 118 2e-24
seq356 102 2e-19
seq1302 87.8 3e-15
seq1273 82.4 1e-13
>seq1236
Length=11430
Score = 300 bits (332), Expect = 3e-79
Identities = 190/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 5752 CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGTTACACTGACAGAGCCAGCGAGTA 5693
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 5692 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 5635
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 5634 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5575
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 5574 TGATTACGTCCCTGCCCTTTGTA 5552
Score = 138 bits (152), Expect = 2e-30
Identities = 94/106 (89%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| |||||||| | || ||||||||||
Sbjct 6201 GAACGAGACCTTAACCTGCTAAATAGCCCATATTGCTTTGGCAGTATGCTGGCTTCTTAG 6142
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6141 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 6096
>seq1268
Length=10630
Score = 188 bits (208), Expect = 1e-45
Identities = 165/203 (81%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||| |||||| || | ||| ||| ||||| || ||||| ||||| | ||||
Sbjct 4155 CTGTGATGCCTTTAGATATTTTAGGCTGCATGCGCGTTATACTGATAGAGCTAGTGAGTA 4214
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || ||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 4215 C-TC-CCTTGGCTGGAAGGTTTGGGTAATCTTATTAAACTCTGTTGTGCTGGGGATAGAG 4272
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
||| ||||||| | || |||||||||| ||||||||||| || || ||| |||
Sbjct 4273 TATTATAATTATTATTTTTTAACGAGGAATCCCTAGTAAGCGTAAGTTATTAGCTTACGT 4332
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| |||||||| ||||| ||||||
Sbjct 4333 TAATTACGTCTCTGCCTTTTGTA 4355
Score = 73.4 bits (80), Expect = 7e-11
Identities = 49/55 (89%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
|||||||||||||||||| ||| |||| ||| ||||||||||| ||||||||||
Sbjct 3757 GCTTCTTAGAGGGACTATTAGCTTAAGCTGATAGAAGTTTGAGGTAATAACAGGT 3811
>seq1278
Length=10311
Score = 170 bits (188), Expect = 4e-40
Identities = 155/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||||||||||| |||||||| ||| || | || ||||| ||||| | ||||
Sbjct 6125 CTGTGATGCCCTTAGATATTCTGGGCTGCATGCATGTTATACTGATAGAGCTAGTGAGTA 6066
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || | ||||| ||||||||||||||||||| ||||| ||||| | ||| |||||||
Sbjct 6065 C-TCTC-TTGGCTGGAAGGTCTGGGTAATCTTATTAAATTCTGTTATACTGAAGATAGAG 6008
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| ||||||| || || || ||||||| ||||||||| | || || ||| ||||
Sbjct 6007 TATTGTAATTATTACTTTTTAATGAGGAATCCCTAGTAAGTGTAAGTTATTAGCTTGCGT 5948
Query 306 TGATTACGTCCCT 318
|||||||||||||
Sbjct 5947 TGATTACGTCCCT 5935
Score = 77.0 bits (84), Expect = 6e-12
Identities = 78/102 (76%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83
|||| ||||||| |||||||||| |||| || | | ||||||||||||||
Sbjct 6570 GAGATTTTAACCTACTAAATAGCCTATATTACTTTAGCAGTATACTGGCTTCTTAGAGGG 6511
Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
|||||| ||| |||| ||| ||||||||| | ||||| ||||
Sbjct 6510 ACTATCAGCTTAAGCTGATAGAAGTTTGAAGTAATAATAGGT 6469
>seq1304
Length=9648
Score = 165 bits (182), Expect = 2e-38
Identities = 160/203 (79%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||| ||||||||| |||||| | | | | | || |||||||||| | ||||
Sbjct 5935 CTGTGATGCTCTTAGATGTCCTGGGCTGTATGTGTGTTATACTGACAGAGTTAGTGAGTA 5876
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || | ||||| ||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 5875 C-TCTC-TTGGCTGGAAGGTCTGGGTAATCTTATTAAACTCTATTGTGCTGGGGATAGAG 5818
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| |||||||||| || || ||||||| ||||||||| | || ||||| ||
Sbjct 5817 TATTGTAATTATTGCTTTTTAATGAGGAATCCCTAGTAAGTGTAAGTTATCAGTTTATGT 5758
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||| || |||| ||| ||
Sbjct 5757 TGATTATATCTCTGCTTTTTATA 5735
Score = 86.0 bits (94), Expect = 1e-14
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83
|||| ||||||||||||||||| ||||||| | || ||||||||||||||
Sbjct 6380 GAGATCTTAACCTGCTAAATAGTTTATATTGCTTTGGTAGTATGCTGGCTTCTTAGAGGG 6321
Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||| |||| |||| || ||||||||||| ||||| ||||
Sbjct 6320 ACTATTGGCTTAAGCTAATAGAAGTTTGAGGTAATAATAGGT 6279
>seq1315
Length=9210
Score = 156 bits (172), Expect = 8e-36
Identities = 155/198 (78%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| || |||||| | || ||||||||| | || ||||||||| ||| | | | ||
Sbjct 4849 ATACCTTTAGATATCCTAAGCCGCACGCACATTATACTGACAGAACCAGTAAATAC-TC- 4792
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || |||| | || ||||||||| ||||||||| || | |||||||||||| |||
Sbjct 4791 CCTTAGCTGGAAAGCCTAGGTAATCTTATTAAACTCTATCATACTGGGGATAGAGTATTA 4732
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| |||||||||||||||| |||||||||||| || || | | |||| |||
Sbjct 4731 CAATTATTACTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTTATTAACTTACGTTAATT 4672
Query 311 ACGTCCCTGCCCTTTGTA 328
|| | |||||||||| ||
Sbjct 4671 ACATTCCTGCCCTTTATA 4654
>seq1262
Length=10766
Score = 118 bits (130), Expect = 2e-24
Identities = 120/154 (78%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| || |||||| |||| ||| ||||| | |||||||||||||||| ||| | ||
Sbjct 6821 ATACCTTTAGATATTCTAAGCCACACGCACATTACACTGACAGAGCCAGTAAGTAC-TC- 6764
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || |||| |||| ||||| |||||||||||| | | ||| |||||||| |||
Sbjct 6763 CCTTAGCTGGAAAGTCTAAGTAATTTTGTTAAACTCTATTATACTGAGGATAGAGTATTA 6704
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
||||||| ||||| || |||||| ||||||||
Sbjct 6703 TAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6670
>seq356
Length=88761
Score = 102 bits (112), Expect = 2e-19
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 54296 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCGATTGATATTCTTCAAAA 54237
Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| || ||| ||| ||| ||| ||| || || ||| ||| ||||||||||||
Sbjct 54236 AGAAAGCCCTCGTATTCGCAAGTCGTCAATTTGCACTGGTTATGTCTCTGCCCTTTGTA 54178
>seq1302
Length=9750
Score = 87.8 bits (96), Expect = 3e-15
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||| ||||||||||| || ||||| ||| | |||||||||||||| ||| ||||||||
Sbjct 3786 GAAAGTCTGGGTAATTTTATTAAATTCTATTATGCTGGGGATAGAGTATTATAATTATTG 3845
Query 260 CTCTTCAACGAGGAATGCCTAGTAAG 285
|| || || ||||||| ||||||||
Sbjct 3846 CTTTTTAATGAGGAATCTCTAGTAAG 3871
>seq1273
Length=10531
Score = 82.4 bits (90), Expect = 1e-13
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251
||| || ||||||||| ||||| || ||||||||| | | |||||||||||| |||
Sbjct 6395 CTTAGCTGGAAGGTCTAAGTAATTTTATTAAACTCTATTATACTGGGGATAGAGTATTAT 6336
Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
||||||| || || || |||||| ||||||||
Sbjct 6335 AATTATTACTTTTTAATAAGGAATTCCTAGTAA 6303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947182410496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |