Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 232 1e-58
seq1304 150 3e-34
seq1263 114 2e-23
seq1274 109 9e-22
seq1268 91.5 2e-16
seq1726 87.8 3e-15
seq1278 86.0 1e-14
seq1262 80.6 4e-13
seq1299 77.0 5e-12
>seq1236
Length=11430
Score = 232 bits (256), Expect = 1e-58
Identities = 223/278 (80%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 776 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 719
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 659
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | ||| | |||| |||| | || ||| |||||||||||||||| |
Sbjct 658 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 601
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | || ||| | |||||| | ||| | | | ||| |||| |
Sbjct 600 CTTAGCAGGCGATTACTCCGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 543
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 542 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 505
>seq1304
Length=9648
Score = 150 bits (166), Expect = 3e-34
Identities = 205/278 (74%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| | | || ||| ||||||||||||||||||||||||| || |||
Sbjct 959 GTATGAGAGGAACTGTTTATTT-AGA-TAATTGGTTTTTGCGGCTGTCTGACTGGGTAGT 902
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||| || ||||| ||||||||||| || |||||| || ||||||| |||||| |||| |
Sbjct 901 GCCGTGACGCTACTATCTGCTGGATAATAGCTGAATGCTTCTAAGTTAGAATCTATGCTA 842
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | | |||| | || | | || | ||| |||||||||||||||||||| |
Sbjct 841 GAATGCGATGATAC-CTTCCGTACGT-ATAGATGGATACGAATAGGCTTCGGCTTAGCGT 784
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||||||| | || | || |||| | | ||| | | | ||| |||| |
Sbjct 783 CTTAGCAGG-TGATTACTCTGCTGCCTTCGAAGTGGGTAGCGGT-ATTTTGCGAATTGTA 726
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| ||| || ||| ||||| ||||| ||| |||
Sbjct 725 ATTTCAGTATGAGCGGGGTTAAATTCTTTGTAGATGAC 688
>seq1263
Length=10760
Score = 114 bits (126), Expect = 2e-23
Identities = 99/120 (83%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||||||| || | || ||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 9011 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTGTGGCTGTCTGACCAGGCAGTGCCGC 9068
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
| |||| |||| || ||| || ||| ||||||||||||| |||||| || |||||||
Sbjct 9069 AACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATATCAGAACG 9128
>seq1274
Length=10448
Score = 109 bits (120), Expect = 9e-22
Identities = 129/171 (75%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| ||||||| ||||||| || | ||||| |||| ||||| |||||
Sbjct 9181 ATTCAGA-TAATTAGTTTTTGTAGCTGTCTAACTGGATAGTGCTGCGATGCTACTATCTG 9239
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139
|| ||| || | | || ||||||||||||||||| || | |||||| ||| | ||||
Sbjct 9240 CTAGATAATAGTTAAATGCCTCTAAGTCAGAATCTATACTAGAACGTAACGATAC-CTCC 9298
Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190
|||| || ||| |||| ||||| ||||| | | | ||||||||||
Sbjct 9299 TGCATAT-ATAGATAGATATGAATAAGCTTCAGTTTAGTATCTTAGCAGGC 9348
>seq1268
Length=10630
Score = 91.5 bits (100), Expect = 2e-16
Identities = 93/120 (78%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| ||||||||||||||| ||| || ||| | | | ||||| |||||||||||
Sbjct 9155 ATAATTAGTTTTTGCGGCTGTCCGACTGGGTAGTACTGTAATGCTACTATCTGCTGGATA 9214
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146
|| || ||||||||||||| |||||| || ||||| | | || | |||||||| ||
Sbjct 9215 ATAACTAAACGCCTCTAAGTTAGAATCTATATTAGAACACGATAATAC-CTCCTGCATAT 9273
>seq1726
Length=1863
Score = 87.8 bits (96), Expect = 3e-15
Identities = 76/93 (82%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| |||||| |||||| ||| |||||||||| ||||| |||||
Sbjct 1605 ATTCAGA-TAATTAGTTTTTATAGCTGTCCGACTGAATAGTGCCGCGACGCTACTATCTG 1547
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
|||||| || ||||||||| ||||||| |||||
Sbjct 1546 CTGGATAATAGCTGAACGCTTCTAAGTTAGAAT 1514
>seq1278
Length=10311
Score = 86.0 bits (94), Expect = 1e-14
Identities = 124/171 (73%), Gaps = 3/171 (2%)
Strand=Plus/Minus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| |||||| ||| |||||| || ||||| |||| |||| |||||
Sbjct 1131 ATTCAGA-TAATTAGTTTTTATAGCTATCTGACTGGGTAGTGCTGCGATACTACTATCTG 1073
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139
|||||| || || || |||||||||| |||||| || | |||| | ||| | || |
Sbjct 1072 CTGGATAATAACTAAATGCCTCTAAGTTAGAATCTATACTAGAATGCAACGATAC-CTTC 1014
Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190
| | || ||| |||| |||||||||| || | | ||||| ||||
Sbjct 1013 CGTATAT-ATAGATAGATATAAATAGGCTTCAGCTTAGTATCTTAGTAGGC 964
>seq1262
Length=10766
Score = 80.6 bits (88), Expect = 4e-13
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| | || || ||||| || | |||| | |||| ||||||| |||
Sbjct 1826 ATAATTAGTTTTTACAACTATCCAACCAGACAATACCGCAACACTACTATCTGCTAGATA 1767
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| || ||| |||||||||||||||| || ||||||||
Sbjct 1766 ATAACTAAACACCTCTAAGTCAGAATCTATACCAGAACG 1728
>seq1299
Length=9828
Score = 77.0 bits (84), Expect = 5e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| |||||||| ||| || ||| | ||||| |||||||||||
Sbjct 9041 ATAATTAGTTTTTACGGCTGTCCGACTGGGTAGTATTATAATGCTACTATCTGCTGGATA 9100
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123
|| |||||| ||||||||| |||||| || | ||||
Sbjct 9101 ATAGCTGAATACCTCTAAGTTAGAATCTATACTAGAA 9137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819185262848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |