Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1236 232 1e-58 seq1304 150 3e-34 seq1263 114 2e-23 seq1274 109 9e-22 seq1268 91.5 2e-16 seq1726 87.8 3e-15 seq1278 86.0 1e-14 seq1262 80.6 4e-13 seq1299 77.0 5e-12 >seq1236 Length=11430 Score = 232 bits (256), Expect = 1e-58 Identities = 223/278 (80%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 776 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 719 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 718 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 659 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 658 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 601 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | || ||| | |||||| | ||| | | | ||| |||| | Sbjct 600 CTTAGCAGGCGATTACTCCGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 543 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 542 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 505 >seq1304 Length=9648 Score = 150 bits (166), Expect = 3e-34 Identities = 205/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | | || ||| ||||||||||||||||||||||||| || ||| Sbjct 959 GTATGAGAGGAACTGTTTATTT-AGA-TAATTGGTTTTTGCGGCTGTCTGACTGGGTAGT 902 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||| || ||||| ||||||||||| || |||||| || ||||||| |||||| |||| | Sbjct 901 GCCGTGACGCTACTATCTGCTGGATAATAGCTGAATGCTTCTAAGTTAGAATCTATGCTA 842 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | | |||| | || | | || | ||| |||||||||||||||||||| | Sbjct 841 GAATGCGATGATAC-CTTCCGTACGT-ATAGATGGATACGAATAGGCTTCGGCTTAGCGT 784 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| | || | || |||| | | ||| | | | ||| |||| | Sbjct 783 CTTAGCAGG-TGATTACTCTGCTGCCTTCGAAGTGGGTAGCGGT-ATTTTGCGAATTGTA 726 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| ||| || ||| ||||| ||||| ||| ||| Sbjct 725 ATTTCAGTATGAGCGGGGTTAAATTCTTTGTAGATGAC 688 >seq1263 Length=10760 Score = 114 bits (126), Expect = 2e-23 Identities = 99/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| || | || ||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 9011 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTGTGGCTGTCTGACCAGGCAGTGCCGC 9068 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 | |||| |||| || ||| || ||| ||||||||||||| |||||| || ||||||| Sbjct 9069 AACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATATCAGAACG 9128 >seq1274 Length=10448 Score = 109 bits (120), Expect = 9e-22 Identities = 129/171 (75%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| ||||||| ||||||| || | ||||| |||| ||||| ||||| Sbjct 9181 ATTCAGA-TAATTAGTTTTTGTAGCTGTCTAACTGGATAGTGCTGCGATGCTACTATCTG 9239 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 || ||| || | | || ||||||||||||||||| || | |||||| ||| | |||| Sbjct 9240 CTAGATAATAGTTAAATGCCTCTAAGTCAGAATCTATACTAGAACGTAACGATAC-CTCC 9298 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190 |||| || ||| |||| ||||| ||||| | | | |||||||||| Sbjct 9299 TGCATAT-ATAGATAGATATGAATAAGCTTCAGTTTAGTATCTTAGCAGGC 9348 >seq1268 Length=10630 Score = 91.5 bits (100), Expect = 2e-16 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| ||||||||||||||| ||| || ||| | | | ||||| ||||||||||| Sbjct 9155 ATAATTAGTTTTTGCGGCTGTCCGACTGGGTAGTACTGTAATGCTACTATCTGCTGGATA 9214 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 || || ||||||||||||| |||||| || ||||| | | || | |||||||| || Sbjct 9215 ATAACTAAACGCCTCTAAGTTAGAATCTATATTAGAACACGATAATAC-CTCCTGCATAT 9273 >seq1726 Length=1863 Score = 87.8 bits (96), Expect = 3e-15 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| |||||| |||||| ||| |||||||||| ||||| ||||| Sbjct 1605 ATTCAGA-TAATTAGTTTTTATAGCTGTCCGACTGAATAGTGCCGCGACGCTACTATCTG 1547 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||| || ||||||||| ||||||| ||||| Sbjct 1546 CTGGATAATAGCTGAACGCTTCTAAGTTAGAAT 1514 >seq1278 Length=10311 Score = 86.0 bits (94), Expect = 1e-14 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| |||||| ||| |||||| || ||||| |||| |||| ||||| Sbjct 1131 ATTCAGA-TAATTAGTTTTTATAGCTATCTGACTGGGTAGTGCTGCGATACTACTATCTG 1073 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 |||||| || || || |||||||||| |||||| || | |||| | ||| | || | Sbjct 1072 CTGGATAATAACTAAATGCCTCTAAGTTAGAATCTATACTAGAATGCAACGATAC-CTTC 1014 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190 | | || ||| |||| |||||||||| || | | ||||| |||| Sbjct 1013 CGTATAT-ATAGATAGATATAAATAGGCTTCAGCTTAGTATCTTAGTAGGC 964 >seq1262 Length=10766 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| | || || ||||| || | |||| | |||| ||||||| ||| Sbjct 1826 ATAATTAGTTTTTACAACTATCCAACCAGACAATACCGCAACACTACTATCTGCTAGATA 1767 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || || ||| |||||||||||||||| || |||||||| Sbjct 1766 ATAACTAAACACCTCTAAGTCAGAATCTATACCAGAACG 1728 >seq1299 Length=9828 Score = 77.0 bits (84), Expect = 5e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| |||||||| ||| || ||| | ||||| ||||||||||| Sbjct 9041 ATAATTAGTTTTTACGGCTGTCCGACTGGGTAGTATTATAATGCTACTATCTGCTGGATA 9100 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 || |||||| ||||||||| |||||| || | |||| Sbjct 9101 ATAGCTGAATACCTCTAAGTTAGAATCTATACTAGAA 9137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819185262848