Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq298 316 2e-81
seq653 149 5e-31
>seq298
Length=101239
Score = 316 bits (350), Expect = 2e-81
Identities = 642/945 (68%), Gaps = 10/945 (1%)
Strand=Plus/Plus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
|||| ||||| ||||| || ||||||||||| || | ||| ||||| || | |||||||
Sbjct 55447 TGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGA 55506
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
||||| ||||| || || || ||| ||||| || | |||| || || |||||||
Sbjct 55507 TGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGC 55566
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||| || |||||||||| |||| | || |||| ||||| || | ||||| ||
Sbjct 55567 GGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGA 55626
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAA 66238
|||||| ||| || | ||||| | || | | | |||| ||| | ||| |||||
Sbjct 55627 TGGCGTACCACAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTACCCTCGCGCTCGTAC 55685
Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298
| ||||| | || || || || | |||| || | | |||| ||
Sbjct 55686 TTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTG 55745
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|||||||| || | ||| ||||| | || || || | ||| || |||||||| |||
Sbjct 55746 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 55805
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| |||||| ||| |||||||| || || |||||| ||||||| || ||||| |
Sbjct 55806 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 55865
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
||||||||||| |||| ||||| ||||| || || |||||||||||||| | ||
Sbjct 55866 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 55925
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| ||| || ||||||||||| ||||||||| |||||||||||||||| ||| ||
Sbjct 55926 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 55985
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| ||||| || | || |||||||| ||||| ||| || | || ||
Sbjct 55986 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 56045
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGA---GATGGCAGCACAATCGGCCACT 66655
|| || || ||||| || || || ||| |||| || ||||| |||| | |
Sbjct 56046 TGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGC-GCACGTCTTGAGGGT 56104
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
||| | | ||||| || |||||||| |||| || | |||| |||| ||| |||
Sbjct 56105 GTC--GTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 56162
Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775
|||| | || ||| |||| ||| || ||||| | || || || || | ||
Sbjct 56163 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 56222
Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC- 66834
||||| | |||||||||||||| || |||| ||| || || ||| || | ||
Sbjct 56223 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCG 56282
Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTA 66894
||| ||||| | | || ||| |||| ||| | | | | | ||| | | | |||
Sbjct 56283 ACA-CGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTA 56341
Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
|| | |||| |||||||| || ||||| ||| ||||| ||
Sbjct 56342 CGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 56386
>seq653
Length=48578
Score = 149 bits (164), Expect = 5e-31
Identities = 238/335 (71%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || || || |||||||| | |||||| | || |||
Sbjct 6382 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 6323
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| | | |||||| | | ||| ||| || || | |||||
Sbjct 6322 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGA-CGACGAGAAGTTCTTCATCTC 6264
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| || || ||||||||||| ||||| ||||| | | |||||
Sbjct 6263 TCACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACG 6204
Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || | || || || || | ||||||||||| ||||||||||||||||| |
Sbjct 6203 CTTCA-GCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGA 6145
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || ||||||| |||| || | ||||||||||||||||||| | ||||| |
Sbjct 6144 TGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCCTG 6085
Query 61382 CGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415
| | || | | || ||||||| ||||| || ||
Sbjct 6084 CTCAGCG-CACCTATCTGTTCAACGCCATTGACAC 6051
Score = 123 bits (136), Expect = 2e-23
Identities = 331/500 (66%), Gaps = 7/500 (1%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA-ACGGCTACATTTGGTGAACGAT 61492
||| || || |||||| |||| ||||||| | | || | | | || || | | | ||
Sbjct 5976 GAAGGCCGACTGGGCCCTCAAGTGGATCAAC-GACCAGAAGTCCACTTTCGCTCAGCGTC 5918
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
| | || || || | || ||||| | || ||| || | ||||| | |||||||
Sbjct 5917 TTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTT 5858
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612
|| | ||||| ||||| || ||||| || ||||||||| |||||| | || || ||||
Sbjct 5857 GGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCG 5798
Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672
|||| || |||| |||||||| |||| | | | | ||| | | || |
Sbjct 5797 ACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCAC---CTGAAGCACCGCC 5741
Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732
| || || | | || || || || || || | || || ||||| || |
Sbjct 5740 CCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCC 5681
Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792
| || || ||| ||||| | ||| |||| ||||||| || ||| |||||| |
Sbjct 5680 TCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACA 5621
Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTATAATACG 61851
|||||||||| |||||||||||| ||| | | || ||||| || |||| || |
Sbjct 5620 TTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGG-TCTACAAGTCA 5562
Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
| || || ||||| || ||||| | || || || | ||||||||| || || || |||
Sbjct 5561 AGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAG 5502
Query 61912 AAACGTGTAGGCGACTATCA 61931
|| ||||| | ||| || ||
Sbjct 5501 AAGCGTGTCGCCGATTACCA 5482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397559002166480
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