Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq298 316 2e-81 seq653 149 5e-31 >seq298 Length=101239 Score = 316 bits (350), Expect = 2e-81 Identities = 642/945 (68%), Gaps = 10/945 (1%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| ||||| ||||| || ||||||||||| || | ||| ||||| || | ||||||| Sbjct 55447 TGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGA 55506 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 ||||| ||||| || || || ||| ||||| || | |||| || || ||||||| Sbjct 55507 TGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGC 55566 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||| || |||||||||| |||| | || |||| ||||| || | ||||| || Sbjct 55567 GGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGA 55626 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAA 66238 |||||| ||| || | ||||| | || | | | |||| ||| | ||| ||||| Sbjct 55627 TGGCGTACCACAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTACCCTCGCGCTCGTAC 55685 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||||| | || || || || | |||| || | | |||| || Sbjct 55686 TTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTG 55745 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 |||||||| || | ||| ||||| | || || || | ||| || |||||||| ||| Sbjct 55746 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 55805 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || |||||| ||| |||||||| || || |||||| ||||||| || ||||| | Sbjct 55806 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 55865 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 ||||||||||| |||| ||||| ||||| || || |||||||||||||| | || Sbjct 55866 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 55925 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| || ||||||||||| ||||||||| |||||||||||||||| ||| || Sbjct 55926 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 55985 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| ||||| || | || |||||||| ||||| ||| || | || || Sbjct 55986 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 56045 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGA---GATGGCAGCACAATCGGCCACT 66655 || || || ||||| || || || ||| |||| || ||||| |||| | | Sbjct 56046 TGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGC-GCACGTCTTGAGGGT 56104 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 ||| | | ||||| || |||||||| |||| || | |||| |||| ||| ||| Sbjct 56105 GTC--GTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 56162 Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775 |||| | || ||| |||| ||| || ||||| | || || || || | || Sbjct 56163 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 56222 Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC- 66834 ||||| | |||||||||||||| || |||| ||| || || ||| || | || Sbjct 56223 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCG 56282 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTA 66894 ||| ||||| | | || ||| |||| ||| | | | | | ||| | | | ||| Sbjct 56283 ACA-CGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTA 56341 Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || | |||| |||||||| || ||||| ||| ||||| || Sbjct 56342 CGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 56386 >seq653 Length=48578 Score = 149 bits (164), Expect = 5e-31 Identities = 238/335 (71%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || || || |||||||| | |||||| | || ||| Sbjct 6382 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 6323 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | | ||| ||| || || | ||||| Sbjct 6322 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGA-CGACGAGAAGTTCTTCATCTC 6264 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| || || ||||||||||| ||||| ||||| | | ||||| Sbjct 6263 TCACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACG 6204 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | || || || || | ||||||||||| ||||||||||||||||| | Sbjct 6203 CTTCA-GCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGA 6145 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || ||||||| |||| || | ||||||||||||||||||| | ||||| | Sbjct 6144 TGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCCTG 6085 Query 61382 CGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415 | | || | | || ||||||| ||||| || || Sbjct 6084 CTCAGCG-CACCTATCTGTTCAACGCCATTGACAC 6051 Score = 123 bits (136), Expect = 2e-23 Identities = 331/500 (66%), Gaps = 7/500 (1%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA-ACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||| |||| ||||||| | | || | | | || || | | | || Sbjct 5976 GAAGGCCGACTGGGCCCTCAAGTGGATCAAC-GACCAGAAGTCCACTTTCGCTCAGCGTC 5918 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | || || || | || ||||| | || ||| || | ||||| | ||||||| Sbjct 5917 TTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTT 5858 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || ||||| || ||||||||| |||||| | || || |||| Sbjct 5857 GGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCG 5798 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 |||| || |||| |||||||| |||| | | | | ||| | | || | Sbjct 5797 ACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCAC---CTGAAGCACCGCC 5741 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 | || || | | || || || || || || | || || ||||| || | Sbjct 5740 CCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCC 5681 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 | || || ||| ||||| | ||| |||| ||||||| || ||| |||||| | Sbjct 5680 TCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACA 5621 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTATAATACG 61851 |||||||||| |||||||||||| ||| | | || ||||| || |||| || | Sbjct 5620 TTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGG-TCTACAAGTCA 5562 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 | || || ||||| || ||||| | || || || | ||||||||| || || || ||| Sbjct 5561 AGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAG 5502 Query 61912 AAACGTGTAGGCGACTATCA 61931 || ||||| | ||| || || Sbjct 5501 AAGCGTGTCGCCGATTACCA 5482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559002166480