Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq184 214 3e-53
seq488 96.9 5e-18
seq847 91.5 2e-16
>seq184
Length=11254
Score = 214 bits (236), Expect = 3e-53
Identities = 174/206 (84%), Gaps = 5/206 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 5724 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5667
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||
Sbjct 5666 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 5607
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | |||||||| ||||||||||
Sbjct 5606 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCTGTCAGTGTAACGCGCGTGCG 5549
Query 180 GCCCAGAACATCTAAGGGCATCACAG 205
|||||| |||||||||||||||||||
Sbjct 5548 GCCCAGGACATCTAAGGGCATCACAG 5523
>seq488
Length=7421
Score = 96.9 bits (106), Expect = 5e-18
Identities = 163/229 (71%), Gaps = 9/229 (4%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|| ||| |||||||| || | |||| |||| ||| ||| | ||||||||| ||| ||
Sbjct 889 TATAAAAGGCAGGGATATAATTAACGTAAGCT-GATAACTTACACTTACTAGGGATT-CC 832
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
| || || | ||| |||| |||| |||||||||| |||| | ||| | |||||||
Sbjct 831 TTATTAAAAAGCAATAATTACAATACTCTATCCCCAGTACGACAGAGTTTAATAAGATTA 772
Query 121 CCCGGACCTGTCGGC-CAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||||||||| | || |||| | || ||| | | ||||| || | | | |
Sbjct 771 CCCGGACCTTCCAGCTAAAGGAGTATTTACTAG----CTCTGTCAGTATAACATACATAC 716
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
|| |||| |||||| || |||||| |||| ||||| |||||||||||
Sbjct 715 AGCTTAGAATATCTAAAGGTATCACAAACCTATTATTACCTCAAACTTC 667
>seq847
Length=10884
Score = 91.5 bits (100), Expect = 2e-16
Identities = 122/166 (73%), Gaps = 8/166 (5%)
Strand=Plus/Minus
Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93
|||| ||| ||||||||||| | |||||| || |||| || ||||||||| ||||||
Sbjct 4431 TGATAACTTACGCTTACTAGGGA-TTCCTCATTAAAGAGTAATAATTGCAATACTCTATC 4373
Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGG--TGATAGACTC 150
|||| | || | ||| | ||||||||| |||||| | || |||| || |||
Sbjct 4372 CCCAGTATAATAGAGTTTAATAAGATTACCTGGACCTTCCAGCTAAGGGAGTATTTACTA 4313
Query 151 GTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196
| | ||||||||| ||||| |||||||||| | ||||||||
Sbjct 4312 G----CTCTATCAGTGTAACGCGCATGCGGCCCAGGATATCTAAGG 4271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751990704340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |