Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq184 214 3e-53 seq488 96.9 5e-18 seq847 91.5 2e-16 >seq184 Length=11254 Score = 214 bits (236), Expect = 3e-53 Identities = 174/206 (84%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5724 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5667 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 5666 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 5607 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | |||||||| |||||||||| Sbjct 5606 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCTGTCAGTGTAACGCGCGTGCG 5549 Query 180 GCCCAGAACATCTAAGGGCATCACAG 205 |||||| ||||||||||||||||||| Sbjct 5548 GCCCAGGACATCTAAGGGCATCACAG 5523 >seq488 Length=7421 Score = 96.9 bits (106), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || ||| |||||||| || | |||| |||| ||| ||| | ||||||||| ||| || Sbjct 889 TATAAAAGGCAGGGATATAATTAACGTAAGCT-GATAACTTACACTTACTAGGGATT-CC 832 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || || | ||| |||| |||| |||||||||| |||| | ||| | ||||||| Sbjct 831 TTATTAAAAAGCAATAATTACAATACTCTATCCCCAGTACGACAGAGTTTAATAAGATTA 772 Query 121 CCCGGACCTGTCGGC-CAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||||||| | || |||| | || ||| | | ||||| || | | | | Sbjct 771 CCCGGACCTTCCAGCTAAAGGAGTATTTACTAG----CTCTGTCAGTATAACATACATAC 716 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || |||| |||||| || |||||| |||| ||||| ||||||||||| Sbjct 715 AGCTTAGAATATCTAAAGGTATCACAAACCTATTATTACCTCAAACTTC 667 >seq847 Length=10884 Score = 91.5 bits (100), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 |||| ||| ||||||||||| | |||||| || |||| || ||||||||| |||||| Sbjct 4431 TGATAACTTACGCTTACTAGGGA-TTCCTCATTAAAGAGTAATAATTGCAATACTCTATC 4373 Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGG--TGATAGACTC 150 |||| | || | ||| | ||||||||| |||||| | || |||| || ||| Sbjct 4372 CCCAGTATAATAGAGTTTAATAAGATTACCTGGACCTTCCAGCTAAGGGAGTATTTACTA 4313 Query 151 GTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 | | ||||||||| ||||| |||||||||| | |||||||| Sbjct 4312 G----CTCTATCAGTGTAACGCGCATGCGGCCCAGGATATCTAAGG 4271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990704340