Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq184 262 6e-68
seq932 158 2e-36
seq488 147 3e-33
seq847 145 1e-32
seq912 140 5e-31
seq987 136 6e-30
seq487 123 4e-26
seq923 120 5e-25
seq760 113 7e-23
seq656 105 1e-20
seq582 100 5e-19
seq995 96.9 6e-18
>seq184
Length=11254
Score = 262 bits (290), Expect = 6e-68
Identities = 180/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 5179 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 5121
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 5120 ATACTGCCAAAG-CAATATGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5062
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 5061 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 5002
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 5001 AAAGAGCTCTCAATCTGTC 4983
Score = 91.5 bits (100), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 5582 TACTCGCTGGCTCTGTCAGTGTAACGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 5523
>seq932
Length=10792
Score = 158 bits (174), Expect = 2e-36
Identities = 154/197 (78%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|| ||||||| ||| ||||||| || ||| |||| |||||||||||||||||| ||
Sbjct 3763 ACTTGTTATTACCTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGTTAGT 3705
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| | | ||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct 3704 ATACTGCTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGTAATTA 3645
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| |||| || ||||||||| ||| || ||| || ||| ||| ||| ||||
Sbjct 3644 AGTAGATAAATTACTCTACTAACTAAGAATGGCTATACACTACTACCTATAAAATTAAGA 3585
Query 241 AAGAGCTATCAATCTGT 257
||||||| | |||||||
Sbjct 3584 AAGAGCTTTTAATCTGT 3568
>seq488
Length=7421
Score = 147 bits (162), Expect = 3e-33
Identities = 187/252 (74%), Gaps = 9/252 (4%)
Strand=Plus/Minus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| |||||| || | | | | || |||| |||||| || |||||| |||| ||||
Sbjct 739 GCTCTGTCAGTATAACATACATACAGCTTAGAATATCTAAAGGTATCACAAACCTATTAT 680
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG----CCACCA 125
| ||||||||||| || ||| |||| |||| |||||||||||| | || | || |
Sbjct 679 TACCTCAAACTTCTATCAGCT-TAAGCTAATAATCCCTCTAAGAAACTAGTATACTACTA 621
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| ||| | || |||||||| | |||||| ||| ||| |||| |||||| |||
Sbjct 620 A-AATAAT--AT-AAACTATTTAGTAAGTTAAGATCTTATTCATTATTATAATTAAGCAG 565
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| ||||||||| || ||||||||| | || ||| || ||| ||| |||||||||| ||
Sbjct 564 ATAAATCACTCTACTAACTAAGAATAACTATACACTACTACCTATAAAATCAAGAAAAAG 505
Query 246 CTATCAATCTGT 257
|| |||||||||
Sbjct 504 CTCTCAATCTGT 493
>seq847
Length=10884
Score = 145 bits (160), Expect = 1e-32
Identities = 150/195 (77%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| ||||||| || ||| |||| ||||||||||||||||||||||
Sbjct 3918 ACCTATTATTACCTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGCCAGT 3860
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| |||||||| | |||||||| |||||| |||| |||||
Sbjct 3859 ATACTACTAAAGTAATATAAACTATTTAGTAAGTTAAGGTTTCGTTCATTATTATAATTA 3800
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||| |||| || |||||| || | || |||||| | ||||| ||||||||
Sbjct 3799 AGCAGACAAATTACTCTACTAACTAAAAATAACTATACACCACTATCCATAAAATCAAGA 3740
Query 241 AAGAGCTATCAATCT 255
||||||| |||||||
Sbjct 3739 AAGAGCTTTCAATCT 3725
>seq912
Length=10659
Score = 140 bits (154), Expect = 5e-31
Identities = 150/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| | | ||||||| || ||| |||| ||||||| |||||||||| ||
Sbjct 6967 ACCTATTATTACTTTAAACTTCTATCAGCTT-AAGCTAATAGTCTCTCTAAGAAGTTAGT 7025
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| ||||||||||||||||||| ||| |||||||| |||||
Sbjct 7026 ATACTACTAAAGTAATATAGGCTATTTAGCAGGTTAAGATCTTATTCGTTATTATAATTA 7085
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||| |||| || ||||||||| | || ||| || ||| ||| ||| ||||
Sbjct 7086 AGCAGACAAATTACTCTACTAACTAAGAATAACTATACACTACTACCTATAAAATTAAGA 7145
Query 241 AAGAGCTATCAATCTGT 257
||||||| |||||||||
Sbjct 7146 AAGAGCTTTCAATCTGT 7162
>seq987
Length=10416
Score = 136 bits (150), Expect = 6e-30
Identities = 149/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| |||||| | ||||||| ||| ||| || || ||||||||||||||||| ||
Sbjct 3691 ACCTATTATTGTTTTAAACTTCTATTAGCTTGA-GCTGATAGTCCCTCTAAGAAGTTAGT 3633
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| | | ||| |||||||||| ||||||||||||| |||||||| |||||
Sbjct 3632 ATACTATTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCATTCGTTATTATAATTA 3573
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||| |||| || ||||||||| || || ||| | ||| ||| ||| ||||
Sbjct 3572 AGCAGACAAATTACTCTACTAACTAAGAATAGCTATACACTATTACCTATAAAATTAAGA 3513
Query 241 AAGAGCTATCAATCTGT 257
|||| || | |||||||
Sbjct 3512 AAGAACTTTTAATCTGT 3496
>seq487
Length=11137
Score = 123 bits (136), Expect = 4e-26
Identities = 157/215 (73%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
|||| ||||||||| || | |||||||||||| | ||||||| || ||| |||| |
Sbjct 6712 AGAATATCTAAGGGTATTATAGACCTGTTATTATTTTAAACTTCTATCAGCTT-AAGCTA 6770
Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158
|||||||||||||||||| || || | ||| |||||||||| ||||||||
Sbjct 6771 ATAGTCCCTCTAAGAAGCTAGTATATTACTAAAGTAATATAGGCTATTTAGTAGGTTAAG 6830
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||||||| ||||| |||||| ||| |||| ||| || ||||||||| | ||
Sbjct 6831 GTCTCGTTTGTTATTATAATTAAGTAGATAAATTACTTTACTAACTAAGAATAGTTATAT 6890
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
| | ||| ||| ||| |||||| | || | |||
Sbjct 6891 ATTATTACCTATAAAATTAAGAAAAAACTTTTAAT 6925
>seq923
Length=10141
Score = 120 bits (132), Expect = 5e-25
Identities = 161/223 (72%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94
||| |||| |||||| || || | | |||| ||||| ||| ||||||| || ||| ||
Sbjct 6733 GCCTAGAATATCTAAAGGTATTATAAACCTATTATTACCTTAAACTTCTATCAGCTTAAA 6792
Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154
| ||||||| ||||||||| | || | | | ||| |||||||||||||
Sbjct 6793 -CTAATAGTCTCTCTAAGAAACTAGTATACTATTAAAGTAATATAAACTATTTAGCAGGT 6851
Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
|||||||| || |||| |||||| ||| |||| |||| || |||||| ||| ||
Sbjct 6852 TAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTCTACTAACTAAAAACAGCT 6911
Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|| || || ||||| | ||| |||||| |||| | |||||||
Sbjct 6912 ATATACTACTACCCACAAAATTAAGAAAAAGCTCTTAATCTGT 6954
>seq760
Length=10588
Score = 113 bits (124), Expect = 7e-23
Identities = 144/197 (73%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||| ||| ||||||| || | | || | ||| ||||||||||||| ||
Sbjct 6896 ACCTGTTATTACCTTAAACTTCTATCAGTTTAAA-CTGATAATCCCTCTAAGAAGTTAGT 6954
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| | | ||| ||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 6955 ATACTGCTAAAGTAATATAGGCTATTTAGCAGGTTAAGATCTCATTCATTATCGCAATTA 7014
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| |||| || |||||| || || || ||| | | | ||| ||| ||||
Sbjct 7015 AGTAGATAAATTACTCTACTAACTAAAAATAGCTATACACTATTATCTATAAAATTAAGA 7074
Query 241 AAGAGCTATCAATCTGT 257
|| |||| | |||||||
Sbjct 7075 AAAAGCTCTTAATCTGT 7091
>seq656
Length=10319
Score = 105 bits (116), Expect = 1e-20
Identities = 141/195 (72%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||| | | ||||||| || ||| |||| |||||||||||||||||| ||
Sbjct 3448 ACCTGTTATTACTTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGTTAGT 3390
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| |||||||||||||||||| ||| || |||| |||||
Sbjct 3389 ATACTACTAAAGTAATATAAGCTATTTAGCAGGTTAAGATCTTATTTATTATTATAATTA 3330
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| |||| || ||||||||| || || | || | ||| ||| ||||
Sbjct 3329 AATAGATAAATTACTCTACTAACTAAGAATAGCTATATATTACTATTTATAAAATTAAGA 3270
Query 241 AAGAGCTATCAATCT 255
|| |||| |||||||
Sbjct 3269 AAAAGCTCTCAATCT 3255
>seq582
Length=10944
Score = 100 bits (110), Expect = 5e-19
Identities = 132/182 (73%), Gaps = 1/182 (1%)
Strand=Plus/Minus
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135
||||||| ||| | | |||| |||||| |||||||||| || | | |||
Sbjct 3754 AAACTTCTATTAGTTT-AAGCTGATAGTCTCTCTAAGAAGTTAGTATACTGTTAAAGTAA 3696
Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195
||| ||||||| |||||||||||||||| ||||| |||||| ||| |||| | |
Sbjct 3695 TATGGGTTATTTAGTAGGTTAAGGTCTCGTTTGTTATTATAATTAAGTAGATAAATTATT 3636
Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| ||||||||| ||| ||| | || ||| ||| ||| ||||||||| | | |||||
Sbjct 3635 TTACTAACTAAGAATGGCTATGTATTACTACCTATAAAATTAAGAAAGAGTTTTTAATCT 3576
Query 256 GT 257
||
Sbjct 3575 GT 3574
>seq995
Length=9639
Score = 96.9 bits (106), Expect = 6e-18
Identities = 135/188 (72%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||||||||||| ||||||| | ||| |||||||||||||||||| || |
Sbjct 6044 TTATTACCTCAAACTTCTATTGGCTTG-AGCTGATAGTCCCTCTAAGAAGCTAGTATACT 6102
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| | ||| || ||||||| |||||||| ||| ||| |||| |||||| ||
Sbjct 6103 GCTAAAGTAATATAGGTTATTTAGTAGGTTAAGATCTTGTTTATTATTATAATTAAGTAG 6162
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| |||| || ||||||||| || || | | || ||| ||| |||||| |
Sbjct 6163 ATAAATTACTCTACTAACTAAGAATAGCTATATATTATTACTTATAAAATTAAGAAAAAA 6222
Query 246 CTATCAAT 253
|| | |||
Sbjct 6223 CTTTTAAT 6230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796790150556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |