Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq184 262 6e-68 seq932 158 2e-36 seq488 147 3e-33 seq847 145 1e-32 seq912 140 5e-31 seq987 136 6e-30 seq487 123 4e-26 seq923 120 5e-25 seq760 113 7e-23 seq656 105 1e-20 seq582 100 5e-19 seq995 96.9 6e-18 >seq184 Length=11254 Score = 262 bits (290), Expect = 6e-68 Identities = 180/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 5179 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 5121 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 5120 ATACTGCCAAAG-CAATATGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5062 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 5061 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 5002 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 5001 AAAGAGCTCTCAATCTGTC 4983 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 5582 TACTCGCTGGCTCTGTCAGTGTAACGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 5523 >seq932 Length=10792 Score = 158 bits (174), Expect = 2e-36 Identities = 154/197 (78%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 || ||||||| ||| ||||||| || ||| |||| |||||||||||||||||| || Sbjct 3763 ACTTGTTATTACCTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGTTAGT 3705 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | ||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct 3704 ATACTGCTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGTAATTA 3645 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| |||| || ||||||||| ||| || ||| || ||| ||| ||| |||| Sbjct 3644 AGTAGATAAATTACTCTACTAACTAAGAATGGCTATACACTACTACCTATAAAATTAAGA 3585 Query 241 AAGAGCTATCAATCTGT 257 ||||||| | ||||||| Sbjct 3584 AAGAGCTTTTAATCTGT 3568 >seq488 Length=7421 Score = 147 bits (162), Expect = 3e-33 Identities = 187/252 (74%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| |||||| || | | | | || |||| |||||| || |||||| |||| |||| Sbjct 739 GCTCTGTCAGTATAACATACATACAGCTTAGAATATCTAAAGGTATCACAAACCTATTAT 680 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG----CCACCA 125 | ||||||||||| || ||| |||| |||| |||||||||||| | || | || | Sbjct 679 TACCTCAAACTTCTATCAGCT-TAAGCTAATAATCCCTCTAAGAAACTAGTATACTACTA 621 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | ||| | || |||||||| | |||||| ||| ||| |||| |||||| ||| Sbjct 620 A-AATAAT--AT-AAACTATTTAGTAAGTTAAGATCTTATTCATTATTATAATTAAGCAG 565 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | ||||||||| || ||||||||| | || ||| || ||| ||| |||||||||| || Sbjct 564 ATAAATCACTCTACTAACTAAGAATAACTATACACTACTACCTATAAAATCAAGAAAAAG 505 Query 246 CTATCAATCTGT 257 || ||||||||| Sbjct 504 CTCTCAATCTGT 493 >seq847 Length=10884 Score = 145 bits (160), Expect = 1e-32 Identities = 150/195 (77%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| ||||||| || ||| |||| |||||||||||||||||||||| Sbjct 3918 ACCTATTATTACCTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGCCAGT 3860 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| |||||||| | |||||||| |||||| |||| ||||| Sbjct 3859 ATACTACTAAAGTAATATAAACTATTTAGTAAGTTAAGGTTTCGTTCATTATTATAATTA 3800 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||| |||| || |||||| || | || |||||| | ||||| |||||||| Sbjct 3799 AGCAGACAAATTACTCTACTAACTAAAAATAACTATACACCACTATCCATAAAATCAAGA 3740 Query 241 AAGAGCTATCAATCT 255 ||||||| ||||||| Sbjct 3739 AAGAGCTTTCAATCT 3725 >seq912 Length=10659 Score = 140 bits (154), Expect = 5e-31 Identities = 150/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| | | ||||||| || ||| |||| ||||||| |||||||||| || Sbjct 6967 ACCTATTATTACTTTAAACTTCTATCAGCTT-AAGCTAATAGTCTCTCTAAGAAGTTAGT 7025 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| ||||||||||||||||||| ||| |||||||| ||||| Sbjct 7026 ATACTACTAAAGTAATATAGGCTATTTAGCAGGTTAAGATCTTATTCGTTATTATAATTA 7085 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||| |||| || ||||||||| | || ||| || ||| ||| ||| |||| Sbjct 7086 AGCAGACAAATTACTCTACTAACTAAGAATAACTATACACTACTACCTATAAAATTAAGA 7145 Query 241 AAGAGCTATCAATCTGT 257 ||||||| ||||||||| Sbjct 7146 AAGAGCTTTCAATCTGT 7162 >seq987 Length=10416 Score = 136 bits (150), Expect = 6e-30 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| |||||| | ||||||| ||| ||| || || ||||||||||||||||| || Sbjct 3691 ACCTATTATTGTTTTAAACTTCTATTAGCTTGA-GCTGATAGTCCCTCTAAGAAGTTAGT 3633 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | ||| |||||||||| ||||||||||||| |||||||| ||||| Sbjct 3632 ATACTATTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTCATTCGTTATTATAATTA 3573 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||| |||| || ||||||||| || || ||| | ||| ||| ||| |||| Sbjct 3572 AGCAGACAAATTACTCTACTAACTAAGAATAGCTATACACTATTACCTATAAAATTAAGA 3513 Query 241 AAGAGCTATCAATCTGT 257 |||| || | ||||||| Sbjct 3512 AAGAACTTTTAATCTGT 3496 >seq487 Length=11137 Score = 123 bits (136), Expect = 4e-26 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||| ||||||||| || | |||||||||||| | ||||||| || ||| |||| | Sbjct 6712 AGAATATCTAAGGGTATTATAGACCTGTTATTATTTTAAACTTCTATCAGCTT-AAGCTA 6770 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||||||||||| || || | ||| |||||||||| |||||||| Sbjct 6771 ATAGTCCCTCTAAGAAGCTAGTATATTACTAAAGTAATATAGGCTATTTAGTAGGTTAAG 6830 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| ||||| |||||| ||| |||| ||| || ||||||||| | || Sbjct 6831 GTCTCGTTTGTTATTATAATTAAGTAGATAAATTACTTTACTAACTAAGAATAGTTATAT 6890 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 | | ||| ||| ||| |||||| | || | ||| Sbjct 6891 ATTATTACCTATAAAATTAAGAAAAAACTTTTAAT 6925 >seq923 Length=10141 Score = 120 bits (132), Expect = 5e-25 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94 ||| |||| |||||| || || | | |||| ||||| ||| ||||||| || ||| || Sbjct 6733 GCCTAGAATATCTAAAGGTATTATAAACCTATTATTACCTTAAACTTCTATCAGCTTAAA 6792 Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154 | ||||||| ||||||||| | || | | | ||| ||||||||||||| Sbjct 6793 -CTAATAGTCTCTCTAAGAAACTAGTATACTATTAAAGTAATATAAACTATTTAGCAGGT 6851 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||| || |||| |||||| ||| |||| |||| || |||||| ||| || Sbjct 6852 TAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTCTACTAACTAAAAACAGCT 6911 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || || || ||||| | ||| |||||| |||| | ||||||| Sbjct 6912 ATATACTACTACCCACAAAATTAAGAAAAAGCTCTTAATCTGT 6954 >seq760 Length=10588 Score = 113 bits (124), Expect = 7e-23 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||| ||| ||||||| || | | || | ||| ||||||||||||| || Sbjct 6896 ACCTGTTATTACCTTAAACTTCTATCAGTTTAAA-CTGATAATCCCTCTAAGAAGTTAGT 6954 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | ||| ||||||||||||||||||| |||| ||| |||||| ||||| Sbjct 6955 ATACTGCTAAAGTAATATAGGCTATTTAGCAGGTTAAGATCTCATTCATTATCGCAATTA 7014 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| |||| || |||||| || || || ||| | | | ||| ||| |||| Sbjct 7015 AGTAGATAAATTACTCTACTAACTAAAAATAGCTATACACTATTATCTATAAAATTAAGA 7074 Query 241 AAGAGCTATCAATCTGT 257 || |||| | ||||||| Sbjct 7075 AAAAGCTCTTAATCTGT 7091 >seq656 Length=10319 Score = 105 bits (116), Expect = 1e-20 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||| | | ||||||| || ||| |||| |||||||||||||||||| || Sbjct 3448 ACCTGTTATTACTTTAAACTTCTATCAGCTT-AAGCTAATAGTCCCTCTAAGAAGTTAGT 3390 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| |||||||||||||||||| ||| || |||| ||||| Sbjct 3389 ATACTACTAAAGTAATATAAGCTATTTAGCAGGTTAAGATCTTATTTATTATTATAATTA 3330 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| |||| || ||||||||| || || | || | ||| ||| |||| Sbjct 3329 AATAGATAAATTACTCTACTAACTAAGAATAGCTATATATTACTATTTATAAAATTAAGA 3270 Query 241 AAGAGCTATCAATCT 255 || |||| ||||||| Sbjct 3269 AAAAGCTCTCAATCT 3255 >seq582 Length=10944 Score = 100 bits (110), Expect = 5e-19 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 ||||||| ||| | | |||| |||||| |||||||||| || | | ||| Sbjct 3754 AAACTTCTATTAGTTT-AAGCTGATAGTCTCTCTAAGAAGTTAGTATACTGTTAAAGTAA 3696 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| ||||||| |||||||||||||||| ||||| |||||| ||| |||| | | Sbjct 3695 TATGGGTTATTTAGTAGGTTAAGGTCTCGTTTGTTATTATAATTAAGTAGATAAATTATT 3636 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || ||||||||| ||| ||| | || ||| ||| ||| ||||||||| | | ||||| Sbjct 3635 TTACTAACTAAGAATGGCTATGTATTACTACCTATAAAATTAAGAAAGAGTTTTTAATCT 3576 Query 256 GT 257 || Sbjct 3575 GT 3574 >seq995 Length=9639 Score = 96.9 bits (106), Expect = 6e-18 Identities = 135/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||||||||||| ||||||| | ||| |||||||||||||||||| || | Sbjct 6044 TTATTACCTCAAACTTCTATTGGCTTG-AGCTGATAGTCCCTCTAAGAAGCTAGTATACT 6102 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | | ||| || ||||||| |||||||| ||| ||| |||| |||||| || Sbjct 6103 GCTAAAGTAATATAGGTTATTTAGTAGGTTAAGATCTTGTTTATTATTATAATTAAGTAG 6162 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| |||| || ||||||||| || || | | || ||| ||| |||||| | Sbjct 6163 ATAAATTACTCTACTAACTAAGAATAGCTATATATTATTACTTATAAAATTAAGAAAAAA 6222 Query 246 CTATCAAT 253 || | ||| Sbjct 6223 CTTTTAAT 6230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790150556