Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq184 168 8e-40 seq995 89.7 6e-16 seq923 82.4 9e-14 seq1074 78.8 1e-12 seq716 77.0 4e-12 seq656 77.0 4e-12 >seq184 Length=11254 Score = 168 bits (186), Expect = 8e-40 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 4251 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 4192 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 4191 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 4132 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 4131 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 4072 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 4071 GTGAGGCGGACC 4060 >seq995 Length=9639 Score = 89.7 bits (98), Expect = 6e-16 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 ||||||||| || ||||||| | || ||||||||||||| ||||||||||||| Sbjct 6966 TCTAGAAACTAATAAAATAGAACTATATATCTTATTCTATTATTCTATGCTAATGTATTT 7025 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124 | | || | |||| | || | ||||||||| | || |||||||| ||| |||| | | Sbjct 7026 GAGTATAGGTCTGCCTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTCCCCGGT 7085 Query 125 ACA-CCAATGAAGG 137 ||| ||| |||||| Sbjct 7086 ACACCCAGTGAAGG 7099 >seq923 Length=10141 Score = 82.4 bits (90), Expect = 9e-14 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||| || ||||||| | |||||||||||||||| || ||||| |||| | Sbjct 7687 CTAGAAATTAATAAAATAGAATTATATATCCTATTCTATTATTCTATACTAATATATTTG 7746 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTC 118 | ||||||||| | || || ||||||||| | || |||||||| ||| ||| Sbjct 7747 AGTATAAGCCTGCCTGGAGCATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTC 7799 >seq1074 Length=2757 Score = 78.8 bits (86), Expect = 1e-12 Identities = 101/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61 |||| ||||||| || ||||||| | |||||||||||||||| || ||||| || Sbjct 300 GTCT-TAGAAACTAATAAAATAGAACTATATATCCTATTCTATTATTCTATACTAATATA 358 Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC 121 || | ||||| | | | || | ||||||||| | || |||||||||||| ||||| Sbjct 359 TTTAAGTATAAGCTTACCTAGAGTATTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCTT 418 Query 122 CGCACACC-AATGAAGG 137 | | ||| | |||||| Sbjct 419 AGTATACCTAGTGAAGG 435 >seq716 Length=10799 Score = 77.0 bits (84), Expect = 4e-12 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | || ||||||||||||| || |||||||||| Sbjct 8075 CTAGAAACTAATAAAATAGAATTATATATCTTATTCTATTATTCTATACTAATGTATTTA 8134 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 | || |||||||| || | ||||||||| | || |||||||| ||| || || Sbjct 8135 AGTATAGGCCTGCTTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTTCT 8189 >seq656 Length=10319 Score = 77.0 bits (84), Expect = 4e-12 Identities = 97/132 (73%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| || ||||||||| | Sbjct 2520 CTAGAAACTAATAAAATAGAATTATACGTCCTATTCTATTATTCTATATTAATGTATTTG 2461 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || | ||| | || | ||||||||| | || ||||||||| | |||| | | | Sbjct 2460 AGTATAGGTTTGCCTGGAGTATTCTAATTTTTTTAAAGTAAAAGTCTTATTTCCCCAGTA 2401 Query 126 CACC-AATGAAG 136 ||| | ||||| Sbjct 2400 TACCTAGTGAAG 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595192642584