Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq184 168 8e-40
seq995 89.7 6e-16
seq923 82.4 9e-14
seq1074 78.8 1e-12
seq716 77.0 4e-12
seq656 77.0 4e-12
>seq184
Length=11254
Score = 168 bits (186), Expect = 8e-40
Identities = 154/192 (80%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 4251 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 4192
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| |||| |||||||||||| |||| | |||
Sbjct 4191 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 4132
Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
|| ||| |||| ||||| ||| ||| || | ||| | || |||| | |||
Sbjct 4131 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 4072
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 4071 GTGAGGCGGACC 4060
>seq995
Length=9639
Score = 89.7 bits (98), Expect = 6e-16
Identities = 101/134 (75%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64
||||||||| || ||||||| | || ||||||||||||| |||||||||||||
Sbjct 6966 TCTAGAAACTAATAAAATAGAACTATATATCTTATTCTATTATTCTATGCTAATGTATTT 7025
Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124
| | || | |||| | || | ||||||||| | || |||||||| ||| |||| | |
Sbjct 7026 GAGTATAGGTCTGCCTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTCCCCGGT 7085
Query 125 ACA-CCAATGAAGG 137
||| ||| ||||||
Sbjct 7086 ACACCCAGTGAAGG 7099
>seq923
Length=10141
Score = 82.4 bits (90), Expect = 9e-14
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||| || ||||||| | |||||||||||||||| || ||||| |||| |
Sbjct 7687 CTAGAAATTAATAAAATAGAATTATATATCCTATTCTATTATTCTATACTAATATATTTG 7746
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTC 118
| ||||||||| | || || ||||||||| | || |||||||| ||| |||
Sbjct 7747 AGTATAAGCCTGCCTGGAGCATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTC 7799
>seq1074
Length=2757
Score = 78.8 bits (86), Expect = 1e-12
Identities = 101/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61
|||| ||||||| || ||||||| | |||||||||||||||| || ||||| ||
Sbjct 300 GTCT-TAGAAACTAATAAAATAGAACTATATATCCTATTCTATTATTCTATACTAATATA 358
Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC 121
|| | ||||| | | | || | ||||||||| | || |||||||||||| |||||
Sbjct 359 TTTAAGTATAAGCTTACCTAGAGTATTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCTT 418
Query 122 CGCACACC-AATGAAGG 137
| | ||| | ||||||
Sbjct 419 AGTATACCTAGTGAAGG 435
>seq716
Length=10799
Score = 77.0 bits (84), Expect = 4e-12
Identities = 86/115 (75%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | || ||||||||||||| || ||||||||||
Sbjct 8075 CTAGAAACTAATAAAATAGAATTATATATCTTATTCTATTATTCTATACTAATGTATTTA 8134
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
| || |||||||| || | ||||||||| | || |||||||| ||| || ||
Sbjct 8135 AGTATAGGCCTGCTTGGAGTATTCTAATTTTTTTAAAGTAAAAGTTCTGTTTTCT 8189
>seq656
Length=10319
Score = 77.0 bits (84), Expect = 4e-12
Identities = 97/132 (73%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| ||||||||||||||||||| || ||||||||| |
Sbjct 2520 CTAGAAACTAATAAAATAGAATTATACGTCCTATTCTATTATTCTATATTAATGTATTTG 2461
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
| || | ||| | || | ||||||||| | || ||||||||| | |||| | | |
Sbjct 2460 AGTATAGGTTTGCCTGGAGTATTCTAATTTTTTTAAAGTAAAAGTCTTATTTCCCCAGTA 2401
Query 126 CACC-AATGAAG 136
||| | |||||
Sbjct 2400 TACCTAGTGAAG 2389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595192642584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |