Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq184 300 3e-79
seq488 203 6e-50
seq487 170 4e-40
seq847 154 3e-35
seq987 129 1e-27
seq656 129 1e-27
seq970 120 6e-25
seq716 118 2e-24
seq932 114 2e-23
seq912 109 1e-21
seq995 107 4e-21
seq760 105 1e-20
seq56 102 2e-19
>seq184
Length=11254
Score = 300 bits (332), Expect = 3e-79
Identities = 190/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 5523 CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGTTACACTGACAGAGCCAGCGAGTA 5582
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 5583 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 5640
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 5641 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5700
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 5701 TGATTACGTCCCTGCCCTTTGTA 5723
Score = 138 bits (152), Expect = 2e-30
Identities = 94/106 (89%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| |||||||| | || ||||||||||
Sbjct 5074 GAACGAGACCTTAACCTGCTAAATAGCCCATATTGCTTTGGCAGTATGCTGGCTTCTTAG 5133
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5134 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5179
>seq488
Length=7421
Score = 203 bits (224), Expect = 6e-50
Identities = 200/256 (78%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 73 TTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
|||||||||||| ||| ||| |||| ||| ||||||||||| ||||| |||| ||||||
Sbjct 636 TTCTTAGAGGGATTATTAGCTTAAGCTGATAGAAGTTTGAGGTAATAATAGGTTTGTGAT 695
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|| |||||| |||| || | | | | || ||||||||||| | | | | || |
Sbjct 696 ACCTTTAGATATTCTAAGCTGTATGTATGTTATACTGACAGAGCTAGTAAATAC-TC-CT 753
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
|| || |||||||| |||||||||| |||||||||||||| |||||||||||| |||| |
Sbjct 754 TTAGCTGGAAGGTCCGGGTAATCTTATTAAACTCTGTCGTACTGGGGATAGAGTATTGTA 813
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||||||||| || || |||||| ||||||||| | || |||||| |||| ||||
Sbjct 814 ATTATTGCTTTTTAATAAGGAATCCCTAGTAAGTGTAAGTTATCAGCTTACGTTAATTAT 873
Query 313 GTCCCTGCCCTTTGTA 328
|||||||| ||| ||
Sbjct 874 ATCCCTGCCTTTTATA 889
>seq487
Length=11137
Score = 170 bits (188), Expect = 4e-40
Identities = 217/296 (73%), Gaps = 2/296 (1%)
Strand=Plus/Minus
Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82
|||||||||||||| |||||||||| |||| | | ||||||||||||
Sbjct 6836 CGAGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAATATACTAGCTTCTTAGAGG 6777
Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142
|||||| ||| |||| ||| ||||||| | |||||||||||| | || |||||||||
Sbjct 6776 GACTATTAGCTTAAGCTGATAGAAGTTTAAAATAATAACAGGTCTATAATACCCTTAGAT 6717
Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202
|||| || || ||| || ||| | ||||| | ||| | || |||| |||||||
Sbjct 6716 ATTCTAAGCTATACACGCATTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCCGGAA 6659
Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262
| || |||||||| ||||||||| | | || | ||||||| ||| |||||||| |||
Sbjct 6658 AGCCTAAGTAATCTTATTAAACTCTATTATACTAGAGATAGAGTATTACAATTATTACTC 6599
Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
|| || |||||| ||||||||||| || |||||| | || |||| |||||
Sbjct 6598 TTTAATAAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTACATTAATTATATCCCT 6543
>seq847
Length=10884
Score = 154 bits (170), Expect = 3e-35
Identities = 146/184 (79%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194
|||||||| | |||||||||| ||||| |||||||| ||||| | | | | || ||||
Sbjct 4271 CCTTAGATATCCTGGGCCGCATGCGCGTTACACTGATAGAGCTAGTAAATAC-TC-CCTT 4328
Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254
|| |||||||| ||||||||| ||||||||| | | |||||||||||| ||||||||
Sbjct 4329 AGCTGGAAGGTCCAGGTAATCTTATTAAACTCTATTATACTGGGGATAGAGTATTGCAAT 4388
Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314
|||| ||||| || ||||||| ||||||||||| || |||||| || ||||| |
Sbjct 4389 TATTACTCTTTAATGAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTATATTAATTACAT 4448
Query 315 CCCT 318
||||
Sbjct 4449 CCCT 4452
>seq987
Length=10416
Score = 129 bits (142), Expect = 1e-27
Identities = 152/203 (75%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||| ||||||||| | || || ||| || || ||||||||| ||| |||
Sbjct 4035 CTGTGATACCCTTAGATATCCTAAGCTGCATACGTATTATACTGACAGAACCAGTAAGTA 4094
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || | || || || | || |||||||| ||||||||| | | ||||||||||||
Sbjct 4095 C-TCTC-TTAGCTAAAAAGCCTAAGTAATCTTATTAAACTCTATTATACTGGGGATAGAG 4152
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| |||||||||| ||||| ||||||| ||||||||||| || |||||| | |
Sbjct 4153 TATTGTAATTATTGCTTTTCAATGAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTGTAT 4212
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||| ||| || || ||| ||
Sbjct 4213 TGATTATGTCTCTACCTTTTATA 4235
>seq656
Length=10319
Score = 129 bits (142), Expect = 1e-27
Identities = 152/203 (75%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|| |||| ||||||||| | ||| | ||| ||| | || ||| ||||||||| |||
Sbjct 3792 CTATGATACCCTTAGATATCCTGAGTTGCATGCGTGTTATACTAACAGAGCCAGTAAGTA 3851
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||| || |||||| | ||||||||| ||||||||| | | |||| ||||||
Sbjct 3852 C-TC-CCTTAGCTGGAAGGCTTAGGTAATCTTATTAAACTCTATTATACTGGAGATAGAA 3909
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
||| |||||||| |||||||||||||||| ||||||||| || || || ||||
Sbjct 3910 TATTACAATTATTACTCTTCAACGAGGAATTCCTAGTAAGTATAAGTTATTAGTTTGCGT 3969
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| |||| | ||| || ||| ||
Sbjct 3970 TAATTATATTCCTACCTTTTATA 3992
>seq970
Length=9507
Score = 120 bits (132), Expect = 6e-25
Identities = 150/203 (74%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||| || ||||||||| | ||| ||||||| | | |||||| ||||||||| | |
Sbjct 5754 CTGTAATACCCTTAGATATCCTGAGCCGCACACACATTACACTAACAGAGCCAGTAAATA 5695
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||| || ||| | || ||||||| ||||||||| || | ||| ||||||||
Sbjct 5694 C-TC-CCTTAGCTAGAAAGCCTAAATAATCTTATTAAACTCTATCATACTGAGGATAGAG 5637
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| ||||||| || || || |||||| |||||||| | ||||||||| |
Sbjct 5636 CATTATAATTATTACTTTTTAATAAGGAATCCCTAGTAAATACAAGTCATCAGCTTATAT 5577
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||||| || ||| ||
Sbjct 5576 TAATTACATCCCTACCTTTTATA 5554
>seq716
Length=10799
Score = 118 bits (130), Expect = 2e-24
Identities = 120/154 (78%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| || |||||| |||| ||| ||||| | |||||||||||||||| ||| | ||
Sbjct 6798 ATACCTTTAGATATTCTAAGCCACACGCACATTACACTGACAGAGCCAGTAAGTAC-TC- 6741
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || |||| |||| ||||| |||||||||||| | | ||| |||||||| |||
Sbjct 6740 CCTTAGCTGGAAAGTCTAAGTAATTTTGTTAAACTCTATTATACTGAGGATAGAGTATTA 6681
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
||||||| ||||| || |||||| ||||||||
Sbjct 6680 TAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6647
>seq932
Length=10792
Score = 114 bits (126), Expect = 2e-23
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||| || ||||||||| | || ||||||| | || |||||||||||| | | | |
Sbjct 4107 CTGTAATACCCTTAGATATCCTAAGCCGCACACACGTTACACTGACAGAACTAGTAAATA 4166
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||| ||| ||| | | | ||||||| ||||||||| | | ||||||||||||
Sbjct 4167 C-TC-CCTTAGCCAGAAAGCTTAGATAATCTTATTAAACTCTATTATACTGGGGATAGAG 4224
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
||| ||||||| || || |||||||||| |||||||||
Sbjct 4225 TATTATAATTATTACTTTTTAACGAGGAATCCCTAGTAAG 4264
Score = 75.2 bits (82), Expect = 2e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||||||||||||| |||||||||| |||| || | | ||||||||
Sbjct 3658 GAACGAGACCTTAACCTACTAAATAGCCTATATTACTTTAGCAGTATACTAACTTCTTAG 3717
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||| ||| |||| ||| ||||||| ||| ||||||| ||
Sbjct 3718 AGGGACTATTAGCTTAAGCTGATAGAAGTTTAAGGTAATAACAAGT 3763
>seq912
Length=10659
Score = 109 bits (120), Expect = 1e-21
Identities = 121/159 (76%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||| || |||||| | || || | | | | |||||| | ||||||| | |||
Sbjct 6623 CTGTGATACCTTTAGATATCCTAAGCTGTATGTGTATTACACTAATAGAGCCAGCAAGTA 6564
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||| ||||||| | || | ||||||| ||||||||| | | ||||||||||||
Sbjct 6563 C-TC-CCTTAGCCGGAAAGCCTAGATAATCTTATTAAACTCTATTATACTGGGGATAGAG 6506
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
||| ||||||| ||||| || |||||| ||||||||
Sbjct 6505 TATTATAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6467
>seq995
Length=9639
Score = 107 bits (118), Expect = 4e-21
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| |||||| || | || || ||| || || ||||| ||||||| | | | ||
Sbjct 5690 ATACCCTTAAATATCCTAAGCTGCATACGTATTATACTGATAGAGCCAGTAAATAC-TC- 5633
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| ||| ||| | | ||||||||| ||||||||| | | |||| |||| || |||
Sbjct 5632 CCTTAGCCAGAAAGCTTAGGTAATCTTATTAAACTCTATTATACTGGAGATAAAGTATTA 5573
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| ||||||||||| |||| |||||||| ||| |||||||| | || |||
Sbjct 5572 TAATTATTACTCTTCAACGAAGAATCCCTAGTAAACGCAAATCATCAGCTTACATTAATT 5513
Query 311 ACGTCCCT 318
|| |||||
Sbjct 5512 ACATCCCT 5505
Score = 75.2 bits (82), Expect = 2e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
||| |||||||| ||||||| || |||| || | | ||||||||||||||
Sbjct 6139 AGATCTTAACCTACTAAATAACCTATATTACTTTAGCAGTATACTAGCTTCTTAGAGGGA 6080
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAA 120
||||| ||||||||| || ||||||||||| |||||
Sbjct 6079 CTATCAGCTCAAGCCAATAGAAGTTTGAGGTAATAA 6044
>seq760
Length=10588
Score = 105 bits (116), Expect = 1e-20
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|||| | ||||||||||| || ||| ||| | || ||| | ||||| | ||| | |
Sbjct 6549 TGATACTTTTAGATGTTCTAAGCTGCATGCGTGTTATACTAATAGAGCTAGTAAGTAC-T 6491
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
| | || || ||| | | | ||||||| ||||||||| | | ||||||||| || ||
Sbjct 6490 C-CTTTAGCTAGAAAGCTTAGATAATCTTATTAAACTCTATTATACTGGGGATAAAGTAT 6432
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
| |||||||||| || || ||||||| |||||||| || || |||||| |||| |
Sbjct 6431 TATAATTATTGCTTTTTAATGAGGAATCCCTAGTAAACGTAAGTTATCAGCTTACGTTAA 6372
Query 309 TTACGTCCCTGCCCTTTGTA 328
||| | |||||| ||| ||
Sbjct 6371 TTATATTCCTGCCTTTTATA 6352
>seq56
Length=169210
Score = 102 bits (112), Expect = 2e-19
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 134906 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCGATTGATATTCTTCAAAA 134847
Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| || ||| ||| ||| ||| ||| || || ||| ||| ||||||||||||
Sbjct 134846 AGAAAGCCCTCGTATTCGCAAGTCGTCAATTTGCACTGGTTATGTCTCTGCCCTTTGTA 134788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947187913728
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