Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq184 300 3e-79 seq488 203 6e-50 seq487 170 4e-40 seq847 154 3e-35 seq987 129 1e-27 seq656 129 1e-27 seq970 120 6e-25 seq716 118 2e-24 seq932 114 2e-23 seq912 109 1e-21 seq995 107 4e-21 seq760 105 1e-20 seq56 102 2e-19 >seq184 Length=11254 Score = 300 bits (332), Expect = 3e-79 Identities = 190/203 (94%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| Sbjct 5523 CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGTTACACTGACAGAGCCAGCGAGTA 5582 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 5583 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 5640 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| Sbjct 5641 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5700 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 5701 TGATTACGTCCCTGCCCTTTGTA 5723 Score = 138 bits (152), Expect = 2e-30 Identities = 94/106 (89%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| |||||||| | || |||||||||| Sbjct 5074 GAACGAGACCTTAACCTGCTAAATAGCCCATATTGCTTTGGCAGTATGCTGGCTTCTTAG 5133 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5134 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5179 >seq488 Length=7421 Score = 203 bits (224), Expect = 6e-50 Identities = 200/256 (78%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| ||| ||| |||| ||| ||||||||||| ||||| |||| |||||| Sbjct 636 TTCTTAGAGGGATTATTAGCTTAAGCTGATAGAAGTTTGAGGTAATAATAGGTTTGTGAT 695 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 || |||||| |||| || | | | | || ||||||||||| | | | | || | Sbjct 696 ACCTTTAGATATTCTAAGCTGTATGTATGTTATACTGACAGAGCTAGTAAATAC-TC-CT 753 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 || || |||||||| |||||||||| |||||||||||||| |||||||||||| |||| | Sbjct 754 TTAGCTGGAAGGTCCGGGTAATCTTATTAAACTCTGTCGTACTGGGGATAGAGTATTGTA 813 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||||||||| || || |||||| ||||||||| | || |||||| |||| |||| Sbjct 814 ATTATTGCTTTTTAATAAGGAATCCCTAGTAAGTGTAAGTTATCAGCTTACGTTAATTAT 873 Query 313 GTCCCTGCCCTTTGTA 328 |||||||| ||| || Sbjct 874 ATCCCTGCCTTTTATA 889 >seq487 Length=11137 Score = 170 bits (188), Expect = 4e-40 Identities = 217/296 (73%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82 |||||||||||||| |||||||||| |||| | | |||||||||||| Sbjct 6836 CGAGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAATATACTAGCTTCTTAGAGG 6777 Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142 |||||| ||| |||| ||| ||||||| | |||||||||||| | || ||||||||| Sbjct 6776 GACTATTAGCTTAAGCTGATAGAAGTTTAAAATAATAACAGGTCTATAATACCCTTAGAT 6717 Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202 |||| || || ||| || ||| | ||||| | ||| | || |||| ||||||| Sbjct 6716 ATTCTAAGCTATACACGCATTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCCGGAA 6659 Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 | || |||||||| ||||||||| | | || | ||||||| ||| |||||||| ||| Sbjct 6658 AGCCTAAGTAATCTTATTAAACTCTATTATACTAGAGATAGAGTATTACAATTATTACTC 6599 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 || || |||||| ||||||||||| || |||||| | || |||| ||||| Sbjct 6598 TTTAATAAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTACATTAATTATATCCCT 6543 >seq847 Length=10884 Score = 154 bits (170), Expect = 3e-35 Identities = 146/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||| | |||||||||| ||||| |||||||| ||||| | | | | || |||| Sbjct 4271 CCTTAGATATCCTGGGCCGCATGCGCGTTACACTGATAGAGCTAGTAAATAC-TC-CCTT 4328 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 || |||||||| ||||||||| ||||||||| | | |||||||||||| |||||||| Sbjct 4329 AGCTGGAAGGTCCAGGTAATCTTATTAAACTCTATTATACTGGGGATAGAGTATTGCAAT 4388 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| ||||| || ||||||| ||||||||||| || |||||| || ||||| | Sbjct 4389 TATTACTCTTTAATGAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTATATTAATTACAT 4448 Query 315 CCCT 318 |||| Sbjct 4449 CCCT 4452 >seq987 Length=10416 Score = 129 bits (142), Expect = 1e-27 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||| ||||||||| | || || ||| || || ||||||||| ||| ||| Sbjct 4035 CTGTGATACCCTTAGATATCCTAAGCTGCATACGTATTATACTGACAGAACCAGTAAGTA 4094 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || | || || || | || |||||||| ||||||||| | | |||||||||||| Sbjct 4095 C-TCTC-TTAGCTAAAAAGCCTAAGTAATCTTATTAAACTCTATTATACTGGGGATAGAG 4152 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| |||||||||| ||||| ||||||| ||||||||||| || |||||| | | Sbjct 4153 TATTGTAATTATTGCTTTTCAATGAGGAATCCCTAGTAAGCGTAAGTTATCAGCTTGTAT 4212 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| ||| || || ||| || Sbjct 4213 TGATTATGTCTCTACCTTTTATA 4235 >seq656 Length=10319 Score = 129 bits (142), Expect = 1e-27 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || |||| ||||||||| | ||| | ||| ||| | || ||| ||||||||| ||| Sbjct 3792 CTATGATACCCTTAGATATCCTGAGTTGCATGCGTGTTATACTAACAGAGCCAGTAAGTA 3851 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||| || |||||| | ||||||||| ||||||||| | | |||| |||||| Sbjct 3852 C-TC-CCTTAGCTGGAAGGCTTAGGTAATCTTATTAAACTCTATTATACTGGAGATAGAA 3909 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||| |||||||| |||||||||||||||| ||||||||| || || || |||| Sbjct 3910 TATTACAATTATTACTCTTCAACGAGGAATTCCTAGTAAGTATAAGTTATTAGTTTGCGT 3969 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | |||| | ||| || ||| || Sbjct 3970 TAATTATATTCCTACCTTTTATA 3992 >seq970 Length=9507 Score = 120 bits (132), Expect = 6e-25 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||| || ||||||||| | ||| ||||||| | | |||||| ||||||||| | | Sbjct 5754 CTGTAATACCCTTAGATATCCTGAGCCGCACACACATTACACTAACAGAGCCAGTAAATA 5695 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||| || ||| | || ||||||| ||||||||| || | ||| |||||||| Sbjct 5694 C-TC-CCTTAGCTAGAAAGCCTAAATAATCTTATTAAACTCTATCATACTGAGGATAGAG 5637 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||||| || || || |||||| |||||||| | ||||||||| | Sbjct 5636 CATTATAATTATTACTTTTTAATAAGGAATCCCTAGTAAATACAAGTCATCAGCTTATAT 5577 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||||| || ||| || Sbjct 5576 TAATTACATCCCTACCTTTTATA 5554 >seq716 Length=10799 Score = 118 bits (130), Expect = 2e-24 Identities = 120/154 (78%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || || |||||| |||| ||| ||||| | |||||||||||||||| ||| | || Sbjct 6798 ATACCTTTAGATATTCTAAGCCACACGCACATTACACTGACAGAGCCAGTAAGTAC-TC- 6741 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || |||| |||| ||||| |||||||||||| | | ||| |||||||| ||| Sbjct 6740 CCTTAGCTGGAAAGTCTAAGTAATTTTGTTAAACTCTATTATACTGAGGATAGAGTATTA 6681 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||||||| ||||| || |||||| |||||||| Sbjct 6680 TAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6647 >seq932 Length=10792 Score = 114 bits (126), Expect = 2e-23 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||| || ||||||||| | || ||||||| | || |||||||||||| | | | | Sbjct 4107 CTGTAATACCCTTAGATATCCTAAGCCGCACACACGTTACACTGACAGAACTAGTAAATA 4166 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||| ||| ||| | | | ||||||| ||||||||| | | |||||||||||| Sbjct 4167 C-TC-CCTTAGCCAGAAAGCTTAGATAATCTTATTAAACTCTATTATACTGGGGATAGAG 4224 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||| ||||||| || || |||||||||| ||||||||| Sbjct 4225 TATTATAATTATTACTTTTTAACGAGGAATCCCTAGTAAG 4264 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||||| |||| || | | |||||||| Sbjct 3658 GAACGAGACCTTAACCTACTAAATAGCCTATATTACTTTAGCAGTATACTAACTTCTTAG 3717 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||||||||| ||| |||| ||| ||||||| ||| ||||||| || Sbjct 3718 AGGGACTATTAGCTTAAGCTGATAGAAGTTTAAGGTAATAACAAGT 3763 >seq912 Length=10659 Score = 109 bits (120), Expect = 1e-21 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||| || |||||| | || || | | | | |||||| | ||||||| | ||| Sbjct 6623 CTGTGATACCTTTAGATATCCTAAGCTGTATGTGTATTACACTAATAGAGCCAGCAAGTA 6564 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||| ||||||| | || | ||||||| ||||||||| | | |||||||||||| Sbjct 6563 C-TC-CCTTAGCCGGAAAGCCTAGATAATCTTATTAAACTCTATTATACTGGGGATAGAG 6506 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 ||| ||||||| ||||| || |||||| |||||||| Sbjct 6505 TATTATAATTATTACTCTTTAATAAGGAATCCCTAGTAA 6467 >seq995 Length=9639 Score = 107 bits (118), Expect = 4e-21 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || |||||| || | || || ||| || || ||||| ||||||| | | | || Sbjct 5690 ATACCCTTAAATATCCTAAGCTGCATACGTATTATACTGATAGAGCCAGTAAATAC-TC- 5633 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||| ||| | | ||||||||| ||||||||| | | |||| |||| || ||| Sbjct 5632 CCTTAGCCAGAAAGCTTAGGTAATCTTATTAAACTCTATTATACTGGAGATAAAGTATTA 5573 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||||||||| |||| |||||||| ||| |||||||| | || ||| Sbjct 5572 TAATTATTACTCTTCAACGAAGAATCCCTAGTAAACGCAAATCATCAGCTTACATTAATT 5513 Query 311 ACGTCCCT 318 || ||||| Sbjct 5512 ACATCCCT 5505 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||| |||||||| ||||||| || |||| || | | |||||||||||||| Sbjct 6139 AGATCTTAACCTACTAAATAACCTATATTACTTTAGCAGTATACTAGCTTCTTAGAGGGA 6080 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAA 120 ||||| ||||||||| || ||||||||||| ||||| Sbjct 6079 CTATCAGCTCAAGCCAATAGAAGTTTGAGGTAATAA 6044 >seq760 Length=10588 Score = 105 bits (116), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||| | ||||||||||| || ||| ||| | || ||| | ||||| | ||| | | Sbjct 6549 TGATACTTTTAGATGTTCTAAGCTGCATGCGTGTTATACTAATAGAGCTAGTAAGTAC-T 6491 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | | || || ||| | | | ||||||| ||||||||| | | ||||||||| || || Sbjct 6490 C-CTTTAGCTAGAAAGCTTAGATAATCTTATTAAACTCTATTATACTGGGGATAAAGTAT 6432 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 | |||||||||| || || ||||||| |||||||| || || |||||| |||| | Sbjct 6431 TATAATTATTGCTTTTTAATGAGGAATCCCTAGTAAACGTAAGTTATCAGCTTACGTTAA 6372 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| | |||||| ||| || Sbjct 6371 TTATATTCCTGCCTTTTATA 6352 >seq56 Length=169210 Score = 102 bits (112), Expect = 2e-19 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 134906 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCGATTGATATTCTTCAAAA 134847 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||| ||| ||| ||| ||| || || ||| ||| |||||||||||| Sbjct 134846 AGAAAGCCCTCGTATTCGCAAGTCGTCAATTTGCACTGGTTATGTCTCTGCCCTTTGTA 134788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947187913728