Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq184 232 1e-58 seq987 147 4e-33 seq760 134 2e-29 seq995 125 1e-26 seq488 125 1e-26 seq656 123 4e-26 seq1063 114 2e-23 seq912 111 3e-22 seq970 104 4e-20 seq932 95.1 2e-17 seq923 95.1 2e-17 seq446 87.8 3e-15 seq716 80.6 4e-13 >seq184 Length=11254 Score = 232 bits (256), Expect = 1e-58 Identities = 223/278 (80%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 10499 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 10556 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10557 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 10616 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 10617 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 10674 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | || ||| | |||||| | ||| | | | ||| |||| | Sbjct 10675 CTTAGCAGGCGATTACTCCGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 10732 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 10733 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 10770 >seq987 Length=10416 Score = 147 bits (162), Expect = 4e-33 Identities = 137/170 (81%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| |||||||| ||| || |||||||||||||||||| ||||| |||| Sbjct 9029 ATTCAGA-TAATTAGTTTTTGCAGCTATCCGACCAGGCAGTGCCGCGACGCTACTATCTA 9087 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 |||||| || |||||||||||||||||||||||| || |||||||| | || | |||| Sbjct 9088 CTGGATAATAGCTGAACGCCTCTAAGTCAGAATCTATACCAGAACGCGACAATAC-CTCC 9146 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189 |||||| || || || |||||||||| || | | ||||||||| Sbjct 9147 CGCACAT-ACAGATAGACACAAATAGGCTTCAGCTTAGCATCTTAGCAGG 9195 >seq760 Length=10588 Score = 134 bits (148), Expect = 2e-29 Identities = 199/274 (73%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||| || | |||||| ||||| |||||||| ||| || ||| ||| ||| Sbjct 1576 GTACGAAAGGAACTGCTTA-TTCAGA-TAATTAGTTTTTGCAGCTATCCGACTAGGTAGT 1519 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||| ||||||||||| || ||||||||||||||||| |||||| || | | Sbjct 1518 GCCGCGACGCTACTATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACTA 1459 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| ||| | |||| | || | || ||||| |||||||||| || | | Sbjct 1458 GAACGTAACGATAC-CTCCCGTACGT-ACAGATAGATACAAATAGGCTTCAGCTTAGTAT 1401 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||| ||| | || ||| | |||||| | ||| | | | ||| |||| | Sbjct 1400 CTTAGTAGGTAATTACTCTGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 1343 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGA 274 |||||| ||| || | ||||| |||| |||| Sbjct 1342 ATTTCAGTATGAGCGAAGTTAAATTCTTTACAGA 1309 >seq995 Length=9639 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| |||||||| |||||||||||||||||| ||||| |||| || ||| Sbjct 695 ATAATTAGTTTTTACGGCTGTCCGACCAGGCAGTGCCGCGACGCTACTATCTACTAGATA 636 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||||||||||||||||| |||||| || |||||||| Sbjct 635 ATAGCTGAACGCCTCTAAGTTAGAATCTATACCAGAACG 597 >seq488 Length=7421 Score = 125 bits (138), Expect = 1e-26 Identities = 132/170 (78%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||| |||| Sbjct 5681 ATTCAGA-TAATTAGTTTTTGCGGCTGTCCGACTGGGCAGTGCCGCGATACTACTATCTA 5739 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 || ||| || ||||||||||||||||| |||||| || |||||| | | |||| | |||| Sbjct 5740 CTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACCAGAATGTGATGATAC-CTCC 5798 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189 | || || || || | |||||| ||| || | | ||||||||| Sbjct 5799 TACATAT-ACAGATAGACATAAATAGGTTTCAGCTTAGCATCTTAGCAGG 5847 >seq656 Length=10319 Score = 123 bits (136), Expect = 4e-26 Identities = 104/125 (83%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | | |||||| |||||||||||||| |||||| ||| ||||| Sbjct 8768 GTATGAGAGGAACTACTTA-TTCAGA-TAATTGGTTTTTGCAGCTGTCCAACCGAGCAGT 8825 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||| |||| || || || ||||||||||||||||| ||||||||| ||| Sbjct 8826 GCCGCGACGCTACTATCTACTAAATAATAGCTGAACGCCTCTAAGTTAGAATCCATACCA 8885 Query 121 GAACG 125 ||||| Sbjct 8886 GAACG 8890 >seq1063 Length=10287 Score = 114 bits (126), Expect = 2e-23 Identities = 99/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| || | || ||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 9016 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTGTGGCTGTCTGACCAGGCAGTGCCGC 9073 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 | |||| |||| || ||| || ||| ||||||||||||| |||||| || ||||||| Sbjct 9074 AACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATATCAGAACG 9133 >seq912 Length=10659 Score = 111 bits (122), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| || | |||||| ||||| ||||||||||||||| |||| || ||| Sbjct 1647 GTATGAGAGGAACTGCTTA-TTCAGA-TAATTAGTTTTTGCGGCTGTCCGACCGGGTAGT 1590 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||| | |||| || | |||||| || ||| ||||||||||||| |||||| || | | Sbjct 1589 GCCGTAACACTACTATTTACTGGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACTA 1530 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | ||| || ||| |||| | ||| || | |||||||||| || | | Sbjct 1529 GAATGTAACGATACT-TCCCGCACGT-ATAGATAGACATAAATAGGCTTCAGCTTAGTAT 1472 Query 181 CTTAGCAGG 189 ||||| ||| Sbjct 1471 CTTAGTAGG 1463 >seq970 Length=9507 Score = 104 bits (114), Expect = 4e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||||| ||| ||||||| |||||| |||| | ||||| ||||||||||| Sbjct 754 ATAATTAGTTTTTGCAGCTATCTGACCGGGCAGTACCGCAACGCTACTATCTGCTGGATA 695 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 || |||||| ||||||||| |||||| || | |||| Sbjct 694 ATAGCTGAATACCTCTAAGTTAGAATCTATACTAGAA 658 >seq932 Length=10792 Score = 95.1 bits (104), Expect = 2e-17 Identities = 126/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | | || ||| ||||| |||||| |||||| ||| ||||| | Sbjct 9083 GTATGAGAGGAACTACTTATTT-AGA-TAATTAGTTTTTATAGCTGTCCGACTAGGCAAT 9140 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || |||| |||| |||| || ||| || ||| ||||||||||||| |||||| || ||| Sbjct 9141 GCTGCGACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACCA 9200 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC 170 ||| | | | || | || || | || || |||| ||||||||||| Sbjct 9201 GAATGCGATAATAC-CTTCTATATAT-ACAGATAGATATGAATAGGCTTC 9248 >seq923 Length=10141 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/116 (79%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | | || ||| ||||| ||||| | ||| ||| |||||||||| Sbjct 1784 GTATGAGAGGAACTACTTATTT-AGA-TAATTAATTTTTACAGCTATCTAACCAGGCAGT 1727 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 | |||| ||||| |||| || ||| || ||||||||||||||||| |||||| || Sbjct 1726 ACTGCGACGCTACTATCTACTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTAT 1671 >seq446 Length=10807 Score = 87.8 bits (96), Expect = 3e-15 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| ||||| |||||| |||||| ||| |||||||||| ||||| ||||| Sbjct 9146 ATTCAGA-TAATTAGTTTTTATAGCTGTCCGACTGAATAGTGCCGCGACGCTACTATCTG 9204 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||| || ||||||||| ||||||| ||||| Sbjct 9205 CTGGATAATAGCTGAACGCTTCTAAGTTAGAAT 9237 >seq716 Length=10799 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| | || || ||||| || | |||| | |||| ||||||| ||| Sbjct 1803 ATAATTAGTTTTTACAACTATCCAACCAGACAATACCGCAACACTACTATCTGCTAGATA 1744 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || || ||| |||||||||||||||| || |||||||| Sbjct 1743 ATAACTAAACACCTCTAAGTCAGAATCTATACCAGAACG 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819189873664