Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq184 232 1e-58
seq987 147 4e-33
seq760 134 2e-29
seq995 125 1e-26
seq488 125 1e-26
seq656 123 4e-26
seq1063 114 2e-23
seq912 111 3e-22
seq970 104 4e-20
seq932 95.1 2e-17
seq923 95.1 2e-17
seq446 87.8 3e-15
seq716 80.6 4e-13
>seq184
Length=11254
Score = 232 bits (256), Expect = 1e-58
Identities = 223/278 (80%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 10499 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 10556
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 10557 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 10616
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | ||| | |||| |||| | || ||| |||||||||||||||| |
Sbjct 10617 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 10674
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | || ||| | |||||| | ||| | | | ||| |||| |
Sbjct 10675 CTTAGCAGGCGATTACTCCGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 10732
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 10733 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 10770
>seq987
Length=10416
Score = 147 bits (162), Expect = 4e-33
Identities = 137/170 (81%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| |||||||| ||| || |||||||||||||||||| ||||| ||||
Sbjct 9029 ATTCAGA-TAATTAGTTTTTGCAGCTATCCGACCAGGCAGTGCCGCGACGCTACTATCTA 9087
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139
|||||| || |||||||||||||||||||||||| || |||||||| | || | ||||
Sbjct 9088 CTGGATAATAGCTGAACGCCTCTAAGTCAGAATCTATACCAGAACGCGACAATAC-CTCC 9146
Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189
|||||| || || || |||||||||| || | | |||||||||
Sbjct 9147 CGCACAT-ACAGATAGACACAAATAGGCTTCAGCTTAGCATCTTAGCAGG 9195
>seq760
Length=10588
Score = 134 bits (148), Expect = 2e-29
Identities = 199/274 (73%), Gaps = 6/274 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| |||||| || | |||||| ||||| |||||||| ||| || ||| ||| |||
Sbjct 1576 GTACGAAAGGAACTGCTTA-TTCAGA-TAATTAGTTTTTGCAGCTATCCGACTAGGTAGT 1519
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||| ||||||||||| || ||||||||||||||||| |||||| || | |
Sbjct 1518 GCCGCGACGCTACTATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACTA 1459
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| ||| | |||| | || | || ||||| |||||||||| || | |
Sbjct 1458 GAACGTAACGATAC-CTCCCGTACGT-ACAGATAGATACAAATAGGCTTCAGCTTAGTAT 1401
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||| ||| | || ||| | |||||| | ||| | | | ||| |||| |
Sbjct 1400 CTTAGTAGGTAATTACTCTGCTGCCCTC-GAAGCGGGTAGCGGT-ATTTCGCGAATTGTA 1343
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGA 274
|||||| ||| || | ||||| |||| ||||
Sbjct 1342 ATTTCAGTATGAGCGAAGTTAAATTCTTTACAGA 1309
>seq995
Length=9639
Score = 125 bits (138), Expect = 1e-26
Identities = 87/99 (88%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| |||||||| |||||||||||||||||| ||||| |||| || |||
Sbjct 695 ATAATTAGTTTTTACGGCTGTCCGACCAGGCAGTGCCGCGACGCTACTATCTACTAGATA 636
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| ||||||||||||||||| |||||| || ||||||||
Sbjct 635 ATAGCTGAACGCCTCTAAGTTAGAATCTATACCAGAACG 597
>seq488
Length=7421
Score = 125 bits (138), Expect = 1e-26
Identities = 132/170 (78%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||| ||||
Sbjct 5681 ATTCAGA-TAATTAGTTTTTGCGGCTGTCCGACTGGGCAGTGCCGCGATACTACTATCTA 5739
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139
|| ||| || ||||||||||||||||| |||||| || |||||| | | |||| | ||||
Sbjct 5740 CTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTATACCAGAATGTGATGATAC-CTCC 5798
Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189
| || || || || | |||||| ||| || | | |||||||||
Sbjct 5799 TACATAT-ACAGATAGACATAAATAGGTTTCAGCTTAGCATCTTAGCAGG 5847
>seq656
Length=10319
Score = 123 bits (136), Expect = 4e-26
Identities = 104/125 (83%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| | | |||||| |||||||||||||| |||||| ||| |||||
Sbjct 8768 GTATGAGAGGAACTACTTA-TTCAGA-TAATTGGTTTTTGCAGCTGTCCAACCGAGCAGT 8825
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||| |||| || || || ||||||||||||||||| ||||||||| |||
Sbjct 8826 GCCGCGACGCTACTATCTACTAAATAATAGCTGAACGCCTCTAAGTTAGAATCCATACCA 8885
Query 121 GAACG 125
|||||
Sbjct 8886 GAACG 8890
>seq1063
Length=10287
Score = 114 bits (126), Expect = 2e-23
Identities = 99/120 (83%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||||||| || | || ||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 9016 AGAGGAACTGCTTATTT-AGA-TAATTAGTTTTTGTGGCTGTCTGACCAGGCAGTGCCGC 9073
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
| |||| |||| || ||| || ||| ||||||||||||| |||||| || |||||||
Sbjct 9074 AACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATATCAGAACG 9133
>seq912
Length=10659
Score = 111 bits (122), Expect = 3e-22
Identities = 141/189 (75%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| || | |||||| ||||| ||||||||||||||| |||| || |||
Sbjct 1647 GTATGAGAGGAACTGCTTA-TTCAGA-TAATTAGTTTTTGCGGCTGTCCGACCGGGTAGT 1590
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||| | |||| || | |||||| || ||| ||||||||||||| |||||| || | |
Sbjct 1589 GCCGTAACACTACTATTTACTGGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACTA 1530
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | ||| || ||| |||| | ||| || | |||||||||| || | |
Sbjct 1529 GAATGTAACGATACT-TCCCGCACGT-ATAGATAGACATAAATAGGCTTCAGCTTAGTAT 1472
Query 181 CTTAGCAGG 189
||||| |||
Sbjct 1471 CTTAGTAGG 1463
>seq970
Length=9507
Score = 104 bits (114), Expect = 4e-20
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||||| ||| ||||||| |||||| |||| | ||||| |||||||||||
Sbjct 754 ATAATTAGTTTTTGCAGCTATCTGACCGGGCAGTACCGCAACGCTACTATCTGCTGGATA 695
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123
|| |||||| ||||||||| |||||| || | ||||
Sbjct 694 ATAGCTGAATACCTCTAAGTTAGAATCTATACTAGAA 658
>seq932
Length=10792
Score = 95.1 bits (104), Expect = 2e-17
Identities = 126/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| | | || ||| ||||| |||||| |||||| ||| ||||| |
Sbjct 9083 GTATGAGAGGAACTACTTATTT-AGA-TAATTAGTTTTTATAGCTGTCCGACTAGGCAAT 9140
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|| |||| |||| |||| || ||| || ||| ||||||||||||| |||||| || |||
Sbjct 9141 GCTGCGACACTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATACCA 9200
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC 170
||| | | | || | || || | || || |||| |||||||||||
Sbjct 9201 GAATGCGATAATAC-CTTCTATATAT-ACAGATAGATATGAATAGGCTTC 9248
>seq923
Length=10141
Score = 95.1 bits (104), Expect = 2e-17
Identities = 92/116 (79%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| | | || ||| ||||| ||||| | ||| ||| ||||||||||
Sbjct 1784 GTATGAGAGGAACTACTTATTT-AGA-TAATTAATTTTTACAGCTATCTAACCAGGCAGT 1727
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
| |||| ||||| |||| || ||| || ||||||||||||||||| |||||| ||
Sbjct 1726 ACTGCGACGCTACTATCTACTAGATAATAGCTGAACGCCTCTAAGTTAGAATCTAT 1671
>seq446
Length=10807
Score = 87.8 bits (96), Expect = 3e-15
Identities = 76/93 (82%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79
||||||| ||||| |||||| |||||| ||| |||||||||| ||||| |||||
Sbjct 9146 ATTCAGA-TAATTAGTTTTTATAGCTGTCCGACTGAATAGTGCCGCGACGCTACTATCTG 9204
Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
|||||| || ||||||||| ||||||| |||||
Sbjct 9205 CTGGATAATAGCTGAACGCTTCTAAGTTAGAAT 9237
>seq716
Length=10799
Score = 80.6 bits (88), Expect = 4e-13
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86
|||||| |||||| | || || ||||| || | |||| | |||| ||||||| |||
Sbjct 1803 ATAATTAGTTTTTACAACTATCCAACCAGACAATACCGCAACACTACTATCTGCTAGATA 1744
Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|| || ||| |||||||||||||||| || ||||||||
Sbjct 1743 ATAACTAAACACCTCTAAGTCAGAATCTATACCAGAACG 1705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819189873664
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