Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq164 316 2e-81
seq1073 149 5e-31
>seq164
Length=162670
Score = 316 bits (350), Expect = 2e-81
Identities = 642/945 (68%), Gaps = 10/945 (1%)
Strand=Plus/Minus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
|||| ||||| ||||| || ||||||||||| || | ||| ||||| || | |||||||
Sbjct 45746 TGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGA 45687
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
||||| ||||| || || || ||| ||||| || | |||| || || |||||||
Sbjct 45686 TGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGC 45627
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||| || |||||||||| |||| | || |||| ||||| || | ||||| ||
Sbjct 45626 GGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGA 45567
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAA 66238
|||||| ||| || | ||||| | || | | | |||| ||| | ||| |||||
Sbjct 45566 TGGCGTACCACAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTACCCTCGCGCTCGTAC 45508
Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298
| ||||| | || || || || | |||| || | | |||| ||
Sbjct 45507 TTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTG 45448
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|||||||| || | ||| ||||| | || || || | ||| || |||||||| |||
Sbjct 45447 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 45388
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| |||||| ||| |||||||| || || |||||| ||||||| || ||||| |
Sbjct 45387 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 45328
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
||||||||||| |||| ||||| ||||| || || |||||||||||||| | ||
Sbjct 45327 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 45268
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| ||| || ||||||||||| ||||||||| |||||||||||||||| ||| ||
Sbjct 45267 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 45208
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| ||||| || | || |||||||| ||||| ||| || | || ||
Sbjct 45207 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 45148
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGA---GATGGCAGCACAATCGGCCACT 66655
|| || || ||||| || || || ||| |||| || ||||| |||| | |
Sbjct 45147 TGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGC-GCACGTCTTGAGGGT 45089
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
||| | | ||||| || |||||||| |||| || | |||| |||| ||| |||
Sbjct 45088 GTC--GTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 45031
Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775
|||| | || ||| |||| ||| || ||||| | || || || || | ||
Sbjct 45030 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 44971
Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC- 66834
||||| | |||||||||||||| || |||| ||| || || ||| || | ||
Sbjct 44970 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCG 44911
Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTA 66894
||| ||||| | | || ||| |||| ||| | | | | | ||| | | | |||
Sbjct 44910 ACA-CGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTA 44852
Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
|| | |||| |||||||| || ||||| ||| ||||| ||
Sbjct 44851 CGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 44807
>seq1073
Length=8604
Score = 149 bits (164), Expect = 5e-31
Identities = 238/335 (71%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || || || |||||||| | |||||| | || |||
Sbjct 2194 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 2253
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| | | |||||| | | ||| ||| || || | |||||
Sbjct 2254 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGA-CGACGAGAAGTTCTTCATCTC 2312
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| || || ||||||||||| ||||| ||||| | | |||||
Sbjct 2313 TCACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACG 2372
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| || || || || | ||||||||||| ||||||||||||||||| |
Sbjct 2373 CTTCAGCG-GTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGA 2431
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || ||||||| |||| || | ||||||||||||||||||| | ||||| |
Sbjct 2432 TGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCCTG 2491
Query 61382 CGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415
| | || | | || ||||||| ||||| || ||
Sbjct 2492 CTCAGCG-CACCTATCTGTTCAACGCCATTGACAC 2525
Score = 123 bits (136), Expect = 2e-23
Identities = 331/500 (66%), Gaps = 7/500 (1%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA-ACGGCTACATTTGGTGAACGAT 61492
||| || || |||||| |||| ||||||| | | || | | | || || | | | ||
Sbjct 2600 GAAGGCCGACTGGGCCCTCAAGTGGATCAAC-GACCAGAAGTCCACTTTCGCTCAGCGTC 2658
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
| | || || || | || ||||| | || ||| || | ||||| | |||||||
Sbjct 2659 TTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTT 2718
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612
|| | ||||| ||||| || ||||| || ||||||||| |||||| | || || ||||
Sbjct 2719 GGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCG 2778
Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672
|||| || |||| |||||||| |||| | | | | ||| | | || |
Sbjct 2779 ACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCAC---CTGAAGCACCGCC 2835
Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732
| || || | | || || || || || || | || || ||||| || |
Sbjct 2836 CCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCC 2895
Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792
| || || ||| ||||| | ||| |||| ||||||| || ||| |||||| |
Sbjct 2896 TCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACA 2955
Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTATAATACG 61851
|||||||||| |||||||||||| ||| | | || ||||| || |||| || |
Sbjct 2956 TTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGG-TCTACAAGTCA 3014
Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
| || || ||||| || ||||| | || || || | ||||||||| || || || |||
Sbjct 3015 AGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAG 3074
Query 61912 AAACGTGTAGGCGACTATCA 61931
|| ||||| | ||| || ||
Sbjct 3075 AAGCGTGTCGCCGATTACCA 3094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397561817320640
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