Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq49 367 1e-96 seq179 178 1e-39 >seq49 Length=112291 Score = 367 bits (406), Expect = 1e-96 Identities = 1221/1880 (65%), Gaps = 52/1880 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | | ||| |||| ||| | || ||||||||||| ||| Sbjct 49592 TCGACGGTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATGCCCGTC 49651 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| || || ||||| | || ||||||||| | | || || Sbjct 49652 TTGAGACCAAGCTTCCAGCCAGCAAAGTGCAT-GCTGGTAATTTTGCCCATGGTAGGATC 49710 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||| ||| |||||| | ||| || || |||||||| Sbjct 49711 CTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGGCAGCCAT 49770 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 | ||| | |||| | || || |||||||||||||||||||| |||||| Sbjct 49771 CTGCACAACGGTACGCTGG---GAGATTTCCCAGACGGTCTTGTACAGAGCCTTTACCTC 49827 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 ||||| | |||| |||||| ||||| || || || || || ||| Sbjct 49828 GGCAGGAATGTTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCTTCAT 49887 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 | || |||||||| |||| |||| |||| || | || | |||| |||||| Sbjct 49888 GGCATCAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGACTTG 49947 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||| || | || |||||||| || ||||||||||| |||||| ||| | || Sbjct 49948 GAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAGCACTC 50007 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| | ||| || | ||| || ||||| ||||||||||| || | || ||| Sbjct 50008 GTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGACTGTT 50067 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 || | || | | | || | | || |||||| | ||| | ||| Sbjct 50068 GCGGACACCATGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAAA--GGTCAGAG 50125 Query 65614 GTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | | ||||| | ||||| || | || ||| | || | || || || Sbjct 50126 GGCTTGACATTC------CACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGCCC 50179 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC---AGCTGGTCTCGAGTGCG 65728 | | | ||| || ||||||||||| | ||| | | ||| || || Sbjct 50180 TCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACTGAACCGACATAGTC---AGAGCA 50236 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCTCGTA 65787 ||| ||||||||||| || || | || || || ||||| |||||| ||| | Sbjct 50237 GCATGGTAAATGGTCTCAAAGAT-CTTCTTGTTGAGGTCACGGGCCTCAGGAGATTCGAA 50295 Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 ||||| | | || |||| ||||| ||||| || || |||| |||||||||||| Sbjct 50296 TGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGGGACG 50355 Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907 ||||||| ||| | | |||||||| || ||||||| |||| ||| || || Sbjct 50356 GTGACGCATGTTGCTATTGCGGGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTT 50415 Query 65908 ATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGT 65965 ||||| ||||| || || || || | || | ||| ||| || || Sbjct 50416 GTTCAAGTTGCGAACGACGACCTGAGTGA--CCTCATGAAGCTTCTGGAAGTC-----GT 50468 Query 65966 TTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023 | || ||| | ||| | || || | |||||||| ||||| || | || Sbjct 50469 AGAC-ACCCTCGTTGTAGT--------CAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGT 50519 Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083 |||||||||| | ||| ||||| ||| ||||| | || || ||||| || || || Sbjct 50520 TGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGC 50579 Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143 ||| |||||||| | |||| || || |||||||| || ||||||||||| | || Sbjct 50580 TGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCA 50639 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 || | || |||| |||||| || | ||| | || |||| |||||| | |||| Sbjct 50640 TGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCT 50699 Query 66204 TCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 | | || | | | |||| || | || ||||| | ||||| | | ||||| Sbjct 50700 TGATGGT-CTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCC 50758 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || || | || | ||||| || |||| | |||||||| || | ||| ||| | Sbjct 50759 TCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCG 50818 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 | || || || | ||| |||||||| || ||||||||||| ||| || ||||| Sbjct 50819 TTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGA 50878 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || |||||| ||||||| || ||||||| || | ||||||||||| ||||| Sbjct 50879 GCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCG 50938 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||| || || ||||| |||||||| | || ||| || |||||||| |||||| Sbjct 50939 TGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACG 50998 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 |||||||| || ||||||||||| | ||| || | || ||||| || |||| ||| Sbjct 50999 TAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTG 51058 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 |||||| | || ||| || || || || ||| | || |||||||| |||||| Sbjct 51059 GTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCG 51118 Query 66623 GCCGTCTTCGAGATGGCAGCACAA-TCGGCCAC-TGTCCGGAATATGCCGTCAATGGAGT 66680 ||| |||| ||||| || || || | |||| | | || || |||||||||| Sbjct 51119 GCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTC--GTAGATACCCTCAATGGAGT 51176 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 | |||| ||| | |||| |||| ||| || ||| | || || |||| || Sbjct 51177 CTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGA 51236 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGA 66800 |||| ||||| | ||||| || ||| | | || ||||| | ||||| |||||||||| Sbjct 51237 AGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGA 51296 Query 66801 CAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCC 66860 | |||| ||| || || || |||| |||| ||||| | | || || || | Sbjct 51297 CGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGCGGTC 51356 Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 ||| | | | | | || | | || ||| || | ||||||||||||| || | Sbjct 51357 TCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGA 51416 Query 66921 AGTACGAGTAATTGAAATCG 66940 |||| ||| ||||| ||| Sbjct 51417 AGTATTGGTAGTTGAAGTCG 51436 >seq179 Length=397792 Score = 178 bits (196), Expect = 1e-39 Identities = 588/904 (65%), Gaps = 68/904 (8%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||| || Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | ||| | ||| | | ||||| Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 380485 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| || ||||| |||||||||||||| | | || || Sbjct 380486 CCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCG 380545 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | ||||| || | | ||||| ||||| |||||||| |||||||| | Sbjct 380546 CTTCA-GCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 380604 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| | ||||| |||| ||| | |||||||| || ||||||| ||||| | Sbjct 380605 TGGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGAGCCTG 380664 Query 61382 CGGAACG-----------TGAACG--ATTG-----------TTCA-ATGCCATCGA---- 61412 || | || | |||| |||| || | ||| ||| | Sbjct 380665 CGCAGCGCACGTACCTCTTTAACGCCATTGACACTAGTATGTTGACATGACATGTACTGT 380724 Query 61413 GA------CGATACCG-GCGGTGAAG-----------CG---GAAAGCGGATTGGGCCTT 61451 || || || | || || || || ||| || || |||||||| Sbjct 380725 GAATGCATCGCTAACTCGCATTGCAGTCCCCGCCATTCGCAAGAAGGCCGACTGGGCCTT 380784 Query 61452 CAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 || ||||||| | || | ||| | || | | || || | || || || | Sbjct 380785 GAAATGGATCAGCG--ACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCT 380842 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || ||||| || |||| ||| | || || ||| | ||||| ||||| Sbjct 380843 GTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGT 380902 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| |||||||||||| ||| ||| | || || |||||||||||| |||| | Sbjct 380903 CTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTGCACACT 380962 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 || ||||| | ||||| | | || | || | | || || || || | | Sbjct 380963 GACTTTGCC---TGCCTATTGTA-CTCTCACCTCAAGCACCGCCCCAACAAGCAGGTTAT 381018 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | || || || || ||||| | || || ||||| || ||||||| ||| |||| Sbjct 381019 TGAGGACATCATTGTCGATGCGGTCAAGATTGAGCAGGAGTTCTTGACTGAGGCTCTGCC 381078 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | ||| |||||||||| | | ||| |||||| ||||| || ||||| || Sbjct 381079 TTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCTGA 381138 Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 |||||| ||||||| | |||| | || || |||| || | ||||| || |||| Sbjct 381139 CCGTCTCTTGGTCGCTCTTGGCAACGACAAGG-TCTACAAGTCTTCCAACCCCTTCGATT 381197 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||||| | ||||| || | || ||||| || || |||||||| ||||| | ||||| Sbjct 381198 TCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACT 381257 Query 61928 ATCA 61931 | || Sbjct 381258 ACCA 381261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566444639440